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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:888.3 nTPM
HPA Brain:301.2 nTPM
GTEx:888.3 nTPM
FANTOM5:208.1 Scaled Tags Per Million
Pig:67.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 242.6
1981 Female, age 72, midline 274.9
2565 Male, age 75, midline 266.7
2048 Male, age 55, midline 237.3
2194 Female, age 79, both hemispheres 228.5
2816 Male, age 47, midline 205.6
Cervical spinal cord, dorsal horn
nTPM: 228.9
2173 Female, age 72, unknown 284.1
2296 Male, age 66, both hemispheres 279.9
2069 Male, age 47, both hemispheres 261.1
1877 Male, age 55, unknown 237.7
2297 Male, age 75, both hemispheres 167.6
2721 Male, age 90, both hemispheres 143.1
Cervical spinal cord, ventral horn
nTPM: 301.2
2480 Male, age 75, both hemispheres 405.4
2809 Male, age 90, both hemispheres 368.3
2098 Female, age 72, unknown 332.9
2295 Male, age 66, both hemispheres 283.6
2068 Male, age 55, unknown 240.4
2820 Female, age 79, both hemispheres 176.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

888.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 888.3
Samples: 159

Max nTPM: 1864.8
Min nTPM: 273.1
Std nTPM: 305.6
Median nTPM: 829.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1864.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1762.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1593.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1573.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1558.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1479.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1449.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1413.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1387.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1375.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1366.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1363.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1362.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1362.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1355.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1349.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1345.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1333.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1304.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1299.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1276.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1274.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1268.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1264.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1260.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1210.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1197.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1186.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1182.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1182.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1175.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1174.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1164.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1163.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1148.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1147.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1142.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1128.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1115.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1102.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1094.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1093.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1056.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1055.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1048.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1044.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1038.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1030.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1026.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 994.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 986.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 981.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 971.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 969.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 967.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 965.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 946.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 940.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 937.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 933.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 928.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 927.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 925.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 917.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 916.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 914.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 911.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 909.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 905.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 901.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 891.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 883.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 876.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 873.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 871.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 857.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 852.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 844.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 832.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 829.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 828.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 827.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 827.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 822.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 818.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 812.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 812.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 806.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 797.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 795.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 792.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 784.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 779.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 778.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 760.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 756.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 752.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 750.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 750.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 749.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 749.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 745.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 745.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 740.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 733.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 720.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 717.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 709.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 709.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 701.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 695.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 686.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 685.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 679.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 678.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 663.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 662.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 659.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 656.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 653.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 649.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 645.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 644.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 640.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 629.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 624.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 612.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 605.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 604.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 590.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 584.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 584.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 572.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 569.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 567.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 566.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 562.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 562.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 561.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 555.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 554.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 553.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 535.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 524.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 511.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 510.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 507.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 503.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 503.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 497.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 491.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 485.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 463.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 458.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 433.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 419.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 406.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 362.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 273.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

208.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 208.1
FF:10181-103D1 60 years, female 225.4
FF:10159-103A6 76 years, female 190.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.9
Samples: 4

Max nTPM: 71.1
Min nTPM: 49.4
Sample A Female 63.1
Sample B Female 60.0
Sample C Male 71.1
Sample D Male 49.4
Ventral spinal cord
nTPM: 67.1
Samples: 4

Max nTPM: 76.0
Min nTPM: 57.0
Sample A Female 60.8
Sample B Female 74.7
Sample C Male 76.0
Sample D Male 57.0

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