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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:630.8 nTPM
GTEx:630.8 nTPM
FANTOM5:554.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008587
Squamous epithelial cells Low

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

630.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 630.8
Samples: 156

Max nTPM: 1515.3
Min nTPM: 371.2
Std nTPM: 192.8
Median nTPM: 583.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1515.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1487.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1275.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1177.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1139.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1006.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 968.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 962.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 934.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 932.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 924.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 915.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 911.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 889.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 873.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 868.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 856.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 853.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 849.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 841.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 833.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 824.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 813.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 797.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 793.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 788.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 784.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 782.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 776.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 774.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 767.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 760.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 759.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 739.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 737.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 724.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 717.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 717.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 714.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 700.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 699.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 689.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 688.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 687.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 678.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 673.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 670.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 669.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 668.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 663.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 663.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 662.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 661.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 661.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 658.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 655.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 655.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 648.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 648.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 646.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 646.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 644.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 636.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 631.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 626.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 626.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 623.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 616.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 614.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 612.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 606.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 601.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 598.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 598.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 590.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 589.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 584.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 584.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 581.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 579.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 579.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 579.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 578.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 578.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 575.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 575.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 574.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 571.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 562.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 560.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 560.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 560.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 558.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 557.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 554.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 553.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 550.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 550.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 545.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 544.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 540.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 535.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 534.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 533.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 528.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 513.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 510.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 509.6
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 508.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 507.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 505.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 501.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 501.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 498.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 496.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 494.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 492.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 492.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 487.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 484.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 483.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 478.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 476.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 476.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 475.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 472.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 467.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 464.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 464.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 463.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 462.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 462.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 455.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 455.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 452.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 450.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 450.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 445.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 444.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 443.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 442.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 438.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 435.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 435.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 435.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 434.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 430.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 427.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 423.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 416.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 405.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 403.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 403.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 398.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 372.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 371.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

554.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 554.7
FF:10204-103F6 68 years, female 554.7

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