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  • PLP1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1991.3 nTPM
HPA Brain:2822.2 nTPM
GTEx:1991.3 nTPM
FANTOM5:1716.2 Scaled Tags Per Million
Pig:1072.0 nTPM
Mouse:812.5 nTPM
Allen mouse:16.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2822.2
Sample id Sample description nTPM
Amygdala
nTPM: 2822.2
2814 Male, age 76, right hemisphere 3973.4
2695 Female, age 67, right hemisphere 3173.4
2514 Male, age 75, right hemisphere 3082.9
2517 Female, age 94, left hemisphere 2164.7
1987 Female, age 91, left hemisphere 1716.4
Basal amygdala
nTPM: 1832.4
2110 Male, age 80, left hemisphere 2314.0
2827 Female, age 67, right hemisphere 2251.8
2685 Female, age 94, left hemisphere 1970.1
1955 Male, age 76, both hemispheres 1951.5
2609 Male, age 75, right hemisphere 1765.9
2243 Female, age 91, right hemisphere 741.1
Central amygdala
nTPM: 2264.8
2826 Female, age 94, left hemisphere 2965.2
1905 Male, age 76, both hemispheres 2901.9
2239 Male, age 80, left hemisphere 2115.6
2515 Male, age 75, right hemisphere 1752.7
2701 Female, age 91, right hemisphere 1588.3
Corticomedial amygdala
nTPM: 1252.7
2428 Male, age 75, right hemisphere 1817.1
2535 Female, age 67, right hemisphere 1429.9
2429 Female, age 94, left hemisphere 1406.7
2240 Male, age 76, both hemispheres 1403.0
2829 Male, age 80, left hemisphere 1001.6
2242 Female, age 91, right hemisphere 457.9
Lateral amygdala
nTPM: 2624.9
1883 Male, age 76, both hemispheres 3194.0
2830 Female, age 67, right hemisphere 3150.8
2516 Male, age 75, right hemisphere 2996.2
2256 Male, age 80, left hemisphere 2558.7
2534 Female, age 94, left hemisphere 2459.3
2255 Female, age 91, right hemisphere 1390.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1991.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1991.3
Samples: 152

Max nTPM: 8773.8
Min nTPM: 12.6
Std nTPM: 1266.2
Median nTPM: 1698.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 8773.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6487.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 6475.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5525.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 5356.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 4604.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4378.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 4112.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3924.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3802.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3615.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 3600.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 3548.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 3534.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 3432.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3391.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3388.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3359.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 3350.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3321.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 3313.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3280.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 3231.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3128.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 3041.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2954.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2896.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2859.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2779.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2773.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2742.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2705.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2683.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2656.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2633.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2632.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2627.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2601.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2573.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2557.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2535.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2453.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2442.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2428.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2391.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2377.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2340.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2323.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2303.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2282.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2280.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2268.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2218.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2190.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2188.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2174.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2152.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2142.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 2108.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2070.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2026.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1990.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1946.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1879.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1878.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1846.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1825.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1822.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1790.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1777.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1759.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1741.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1723.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1719.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1715.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1708.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1687.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1683.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1678.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1667.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1609.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1562.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1546.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1543.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1540.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1494.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1474.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1424.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1416.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1378.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1377.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1368.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1354.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1346.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1326.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1325.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1323.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1317.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1316.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1312.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1305.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1299.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1293.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1277.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1271.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1229.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1223.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1214.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1191.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1190.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1166.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1166.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1153.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1146.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1145.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1130.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1125.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1095.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1029.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1021.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1016.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 994.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 987.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 965.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 944.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 939.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 938.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 918.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 914.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 910.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 890.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 859.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 853.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 839.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 831.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 824.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 818.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 807.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 806.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 804.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 776.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 773.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 768.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 715.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 654.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 602.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 561.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 481.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 464.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 391.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 380.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 12.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1716.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1716.2
FF:10151-102I7 76 years, female 1716.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1072.0
Pig sample Sample description nTPM
Amygdala
nTPM: 1072.1
Samples: 4

Max nTPM: 1935.9
Min nTPM: 588.3
Sample A Female 676.7
Sample B Female 1935.9
Sample C Male 1087.3
Sample D Male 588.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

812.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 812.6
Samples: 4

Max nTPM: 1347.2
Min nTPM: 596.9
Sample A Male 635.4
Sample B Male 596.9
Sample C Female 1347.2
Sample D Female 670.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.3
75496146 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 19.5
75457514 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 19.4
75496510 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 19.4
75496147 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 19.1
75496500 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 19.1
75496148 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 18.2
75496145 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 17.8
75457513 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 17.7
75492714 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 17.6
75492725 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 17.5
75496499 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 17.5
75496529 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 17.2
75457515 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 16.7
75457512 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 16.3
75492715 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 15.9
69117382 Antisense, RP_050330_01_A05, Mouse strain C57BL/6J (56 days, male) 14.8
79556704 Antisense, RP_071204_01_D07, Mouse strain C57BL/6J (56 days, male) 14.8
75492744 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 14.4
2490 Antisense, RP_Baylor_102969, Mouse strain C57BL/6J (56 days, male) 9.7

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