MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3980.0 nTPM
HPA Brain:5557.0 nTPM
GTEx:3980.0 nTPM
FANTOM5:8755.6 Scaled Tags Per Million
Pig:7566.8 nTPM
Mouse:4634.4 nTPM
Allen mouse:21.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 5557.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4208.4
2411 Female, age 72, unknown 6143.8
1830 Male, age 51, unknown 5597.2
1870 Female, age 42, unknown 5433.7
2019 Male, age 18, unknown 5330.1
1833 Male, age 53, unknown 5308.7
2828 Female, age 72, unknown 4123.2
2219 Male, age 76, both hemispheres 3184.8
1827 Male, age 72, unknown 2899.4
2666 Male, age 74, left hemisphere 2383.4
2586 Male, age 75, left hemisphere 1680.1
Dorsal raphe nucleus
nTPM: 3346.7
2750 Male, age 76, both hemispheres 6768.9
2016 Female, age 72, unknown 3540.9
1828 Male, age 53, unknown 2895.5
2298 Female, age 72, unknown 1811.6
2047 Male, age 72, unknown 1716.6
Inferior colliculus
nTPM: 2640.4
1848 Female, age 42, unknown 2892.9
1890 Male, age 53, unknown 2796.1
2849 Male, age 72, unknown 2542.0
2097 Female, age 72, unknown 2330.6
Median raphe nucleus
nTPM: 2924.8
2220 Male, age 76, midline 2924.8
Periaquaductal grey, anterior
nTPM: 2400.8
2502 Female, age 75, unknown 3155.6
1947 Male, age 18, unknown 2336.8
1795 Male, age 51, unknown 1709.9
Periaquaductal grey, dorsal
nTPM: 1699.9
2464 Female, age 72, unknown 2989.3
1831 Male, age 72, unknown 1972.6
2850 Male, age 76, both hemispheres 944.7
1840 Male, age 53, unknown 893.1
Periaquaductal grey, lateral
nTPM: 2140.5
2272 Male, age 74, both hemispheres 2918.8
2053 Male, age 18, unknown 2489.5
2140 Male, age 76, both hemispheres 1013.2
Pretectal area
nTPM: 2618.5
2316 Male, age 76, right hemisphere 4110.5
1815 Male, age 53, unknown 3722.5
2407 Male, age 75, both hemispheres 3365.7
1817 Female, age 42, unknown 2890.0
2273 Male, age 74, both hemispheres 2795.9
2825 Male, age 18, unknown 2666.7
2007 Male, age 72, unknown 2664.7
2224 Female, age 72, unknown 2140.3
1944 Female, age 72, unknown 1548.9
2667 Female, age 75, unknown 1521.9
1816 Male, age 51, unknown 1376.8
Red nucleus
nTPM: 5557.0
1865 Male, age 51, unknown 7382.3
1821 Female, age 72, unknown 7359.3
2823 Male, age 76, right hemisphere 7096.5
1904 Male, age 53, unknown 6452.2
2785 Male, age 18, unknown 5963.9
2769 Male, age 72, unknown 5742.3
2227 Male, age 72, unknown 5660.3
2503 Female, age 72, unknown 5415.4
1954 Female, age 42, unknown 5202.6
2725 Female, age 75, unknown 3823.2
2588 Male, age 74, left hemisphere 3301.5
2584 Male, age 75, left hemisphere 3285.0
Substantia nigra
nTPM: 2772.6
2590 Female, age 75, unknown 3635.2
1851 Male, age 51, unknown 3425.9
1889 Female, age 72, unknown 3400.8
2409 Female, age 72, unknown 3217.3
2583 Male, age 75, right hemisphere 2918.8
2241 Male, age 72, unknown 2490.9
2699 Male, age 18, unknown 2476.0
1941 Male, age 53, unknown 2442.7
1916 Female, age 42, unknown 2127.5
2665 Male, age 74, both hemispheres 1591.2
Superior colliculus
nTPM: 3543.9
1913 Female, age 42, unknown 5393.0
1995 Male, age 72, unknown 5134.3
1895 Male, age 76, right hemisphere 4768.8
2587 Male, age 74, left hemisphere 4555.4
2668 Female, age 75, unknown 4008.7
1839 Male, age 51, unknown 3733.3
1796 Male, age 53, unknown 2669.5
2087 Female, age 72, unknown 1959.9
2261 Male, age 18, unknown 1661.0
2664 Male, age 75, both hemispheres 1554.9
Ventral tegmental area
nTPM: 3680.9
2223 Female, age 72, unknown 5856.9
2410 Female, age 72, unknown 4262.1
2218 Male, age 76, both hemispheres 3266.2
2021 Male, age 53, unknown 3039.0
1942 Male, age 51, unknown 2968.8
1915 Female, age 42, unknown 2692.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3980.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3980.0
Samples: 139

Max nTPM: 13380.0
Min nTPM: 681.3
Std nTPM: 2095.1
Median nTPM: 3462.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13380.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 10206.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 9475.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9191.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 8843.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 8553.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8359.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 8259.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 8162.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 8101.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 7671.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8755.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8755.6
FF:10158-103A5 76 years, female 8755.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7566.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5769.0
Samples: 4

Max nTPM: 11113.7
Min nTPM: 2810.1
Sample A Female 5288.4
Sample B Female 2810.1
Sample C Male 3863.7
Sample D Male 11113.7
Midbrain
nTPM: 7566.9
Samples: 4

Max nTPM: 19520.0
Min nTPM: 2534.6
Sample A Female 19520.0
Sample B Female 5419.0
Sample C Male 2534.6
Sample D Male 2793.8
Periaqueductal gray
nTPM: 3448.6
Samples: 3

Max nTPM: 4282.8
Min nTPM: 2254.5
Sample B Female 4282.8
Sample C Male 2254.5
Sample D Male 3808.6
Superior colliculi
nTPM: 4337.6
Samples: 4

Max nTPM: 5757.9
Min nTPM: 2167.3
Sample A Female 4878.8
Sample B Female 2167.3
Sample C Male 4546.5
Sample D Male 5757.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4634.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4634.4
Samples: 4

Max nTPM: 5203.3
Min nTPM: 4072.7
Sample A Male 4107.8
Sample B Male 4072.7
Sample C Female 5153.6
Sample D Female 5203.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.1
75496147 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 22.9
75457515 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 22.8
75457514 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 22.1
75496510 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 22.1
75457512 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 22.0
75457513 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 22.0
69117382 Antisense, RP_050330_01_A05, Mouse strain C57BL/6J (56 days, male) 21.9
75496148 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 21.8
75496529 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 21.7

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