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  • PLP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1486.3 nTPM
FANTOM5:1251.8 Scaled Tags Per Million
Pig:804.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004128
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1486.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1486.3
Samples: 246

Max nTPM: 5944.5
Min nTPM: 354.2
Std nTPM: 833.8
Median nTPM: 1257.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 5944.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 5197.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 4314.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 4208.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3836.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3765.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 3315.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 3195.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3157.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 3129.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3114.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 3058.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2958.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 2835.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2763.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2761.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2752.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2722.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2707.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2688.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2688.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 2683.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2668.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2622.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2604.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2568.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2558.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2545.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2541.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 2510.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2490.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2429.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2415.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2410.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2354.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 2316.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2299.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2271.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2269.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2247.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2205.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2186.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 2159.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2149.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2138.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2127.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2115.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2102.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2099.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2079.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2078.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2073.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 2061.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2052.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 2044.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 2021.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2019.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1994.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1974.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1960.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1954.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1947.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1939.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1910.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1884.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1873.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1860.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1856.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1830.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1819.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1801.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1746.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1743.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1697.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1664.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1656.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1651.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1624.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1623.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1617.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1608.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1606.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1598.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1595.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1590.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1590.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1587.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1586.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1585.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1580.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1574.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1568.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1557.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1514.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1495.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1489.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1482.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1454.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1443.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1439.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1436.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1429.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1419.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1418.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1409.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1402.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1399.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1382.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1379.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1372.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1370.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1368.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1362.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1344.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1339.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1333.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1318.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1310.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1308.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1266.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1263.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1260.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1259.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1254.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1253.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1253.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1251.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1249.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1248.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1247.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1225.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1225.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1219.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1217.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1206.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1202.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1182.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1174.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1171.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1168.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1153.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1134.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1133.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1117.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1116.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1103.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1089.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1088.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1087.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1082.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1048.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1046.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1040.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1031.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1030.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1028.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1024.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1009.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1005.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1002.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1002.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1000.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 994.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 994.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 992.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 989.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 980.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 971.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 967.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 966.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 962.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 958.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 955.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 939.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 938.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 926.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 915.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 908.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 907.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 898.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 897.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 886.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 881.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 879.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 878.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 871.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 861.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 861.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 851.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 847.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 847.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 846.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 840.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 839.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 832.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 829.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 829.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 828.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 827.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 823.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 821.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 810.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 809.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 802.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 798.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 798.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 798.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 785.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 783.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 771.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 770.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 768.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 753.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 749.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 740.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 739.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 709.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 707.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 706.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 686.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 685.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 680.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 673.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 655.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 651.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 636.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 631.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 618.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 616.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 605.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 578.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 577.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 577.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 571.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 567.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 556.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 553.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 549.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 548.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 529.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 484.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 480.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 417.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 394.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 383.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 354.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1251.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1251.8
FF:10164-103B2 76 years, female 1251.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

804.5
Pig sample Sample description nTPM
Caudate
nTPM: 804.5
Samples: 4

Max nTPM: 896.0
Min nTPM: 633.2
Sample A Female 892.2
Sample B Female 633.2
Sample C Male 796.5
Sample D Male 896.0

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