MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1027.5 nTPM
HPA Brain:340.8 nTPM
GTEx:1027.5 nTPM
FANTOM5:283.9 Scaled Tags Per Million
Pig:497.6 nTPM
Mouse:481.6 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 340.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 319.7
2586 Male, age 75, left hemisphere 388.2
2666 Male, age 74, left hemisphere 379.2
2411 Female, age 72, unknown 347.5
2019 Male, age 18, unknown 340.3
1870 Female, age 42, unknown 317.4
1827 Male, age 72, unknown 304.1
2828 Female, age 72, unknown 302.4
2219 Male, age 76, both hemispheres 281.5
1833 Male, age 53, unknown 278.2
1830 Male, age 51, unknown 258.0
Dorsal raphe nucleus
nTPM: 311.0
2298 Female, age 72, unknown 386.7
2750 Male, age 76, both hemispheres 313.0
2016 Female, age 72, unknown 306.3
1828 Male, age 53, unknown 287.5
2047 Male, age 72, unknown 261.3
Inferior colliculus
nTPM: 306.7
2097 Female, age 72, unknown 346.0
1890 Male, age 53, unknown 339.7
2849 Male, age 72, unknown 274.8
1848 Female, age 42, unknown 266.4
Median raphe nucleus
nTPM: 279.6
2220 Male, age 76, midline 279.6
Periaquaductal grey, anterior
nTPM: 340.8
2502 Female, age 75, unknown 420.2
1795 Male, age 51, unknown 324.4
1947 Male, age 18, unknown 277.6
Periaquaductal grey, dorsal
nTPM: 298.5
1840 Male, age 53, unknown 321.9
2464 Female, age 72, unknown 308.5
1831 Male, age 72, unknown 290.1
2850 Male, age 76, both hemispheres 273.7
Periaquaductal grey, lateral
nTPM: 265.7
2053 Male, age 18, unknown 295.7
2140 Male, age 76, both hemispheres 277.9
2272 Male, age 74, both hemispheres 223.4
Pretectal area
nTPM: 310.9
1816 Male, age 51, unknown 386.3
2007 Male, age 72, unknown 355.6
1817 Female, age 42, unknown 355.4
2316 Male, age 76, right hemisphere 335.7
2224 Female, age 72, unknown 333.8
1815 Male, age 53, unknown 322.0
1944 Female, age 72, unknown 290.7
2825 Male, age 18, unknown 286.2
2407 Male, age 75, both hemispheres 257.8
2667 Female, age 75, unknown 257.3
2273 Male, age 74, both hemispheres 239.1
Red nucleus
nTPM: 324.6
2503 Female, age 72, unknown 420.4
2785 Male, age 18, unknown 337.5
1904 Male, age 53, unknown 334.6
2227 Male, age 72, unknown 332.9
1865 Male, age 51, unknown 332.7
1821 Female, age 72, unknown 331.4
2769 Male, age 72, unknown 328.8
2584 Male, age 75, left hemisphere 327.4
2725 Female, age 75, unknown 321.8
2588 Male, age 74, left hemisphere 305.7
1954 Female, age 42, unknown 268.6
2823 Male, age 76, right hemisphere 253.1
Substantia nigra
nTPM: 335.0
1851 Male, age 51, unknown 405.8
2665 Male, age 74, both hemispheres 383.8
2241 Male, age 72, unknown 369.5
2409 Female, age 72, unknown 357.6
2699 Male, age 18, unknown 335.9
2590 Female, age 75, unknown 314.1
1916 Female, age 42, unknown 313.6
1889 Female, age 72, unknown 308.2
2583 Male, age 75, right hemisphere 282.5
1941 Male, age 53, unknown 279.1
Superior colliculus
nTPM: 325.4
1913 Female, age 42, unknown 364.1
2587 Male, age 74, left hemisphere 357.5
1796 Male, age 53, unknown 339.7
2664 Male, age 75, both hemispheres 338.0
1995 Male, age 72, unknown 334.8
2261 Male, age 18, unknown 330.7
2668 Female, age 75, unknown 327.8
2087 Female, age 72, unknown 323.9
1839 Male, age 51, unknown 278.0
1895 Male, age 76, right hemisphere 259.4
Ventral tegmental area
nTPM: 325.3
1915 Female, age 42, unknown 369.3
2021 Male, age 53, unknown 343.4
2410 Female, age 72, unknown 330.5
2223 Female, age 72, unknown 327.3
1942 Male, age 51, unknown 303.2
2218 Male, age 76, both hemispheres 278.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1027.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1027.5
Samples: 139

Max nTPM: 3124.7
Min nTPM: 417.0
Std nTPM: 417.5
Median nTPM: 961.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3124.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2581.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2459.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2274.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2061.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1973.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1930.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1742.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1688.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1622.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1612.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 283.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.9
FF:10158-103A5 76 years, female 283.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 497.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 497.6
Samples: 4

Max nTPM: 680.9
Min nTPM: 391.8
Sample A Female 680.9
Sample B Female 507.1
Sample C Male 410.7
Sample D Male 391.8
Midbrain
nTPM: 459.9
Samples: 4

Max nTPM: 738.4
Min nTPM: 299.1
Sample A Female 738.4
Sample B Female 474.1
Sample C Male 327.9
Sample D Male 299.1
Periaqueductal gray
nTPM: 376.3
Samples: 3

Max nTPM: 409.0
Min nTPM: 353.4
Sample B Female 366.6
Sample C Male 409.0
Sample D Male 353.4
Superior colliculi
nTPM: 443.6
Samples: 4

Max nTPM: 561.6
Min nTPM: 370.4
Sample A Female 561.6
Sample B Female 467.3
Sample C Male 375.2
Sample D Male 370.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 481.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 481.6
Samples: 4

Max nTPM: 584.1
Min nTPM: 381.0
Sample A Male 584.1
Sample B Male 452.6
Sample C Female 381.0
Sample D Female 508.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
70473987 Antisense, RP_050614_04_F10, Mouse strain C57BL/6J (56 days, male) 1.5

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