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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1305.2 nTPM
HPA:900.9 nTPM
GTEx:1305.2 nTPM
FANTOM5:482.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047268Antibody HPA048084
Glandular cells HighMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

900.9
overview
Male, age 65
Small intestine sample 232
nTPM: 1017.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 875.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 882.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 828.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1305.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1305.2
Samples: 187

Max nTPM: 3337.6
Min nTPM: 631.5
Std nTPM: 372.6
Median nTPM: 1229.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3337.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2591.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2262.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2258.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2149.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2087.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2031.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2003.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1921.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1917.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1913.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1881.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1873.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 1857.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1856.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1851.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1848.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1813.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1793.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1771.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1766.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1744.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1741.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1721.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1720.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1708.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1674.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1657.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1656.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1642.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1632.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1627.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1620.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1612.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1603.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1585.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1574.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1571.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1569.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1561.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1555.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1537.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1529.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1522.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1520.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1514.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1509.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1505.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1502.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1498.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1493.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1476.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1473.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1465.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1460.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1460.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1459.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1442.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 1424.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1422.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1412.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1412.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1409.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1399.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1388.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1386.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1381.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1380.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1379.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1376.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1366.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1359.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1349.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1348.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1345.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1343.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1341.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1338.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1326.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1312.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1311.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1301.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1282.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1275.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1265.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1264.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1260.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1254.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1248.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1246.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1241.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1232.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1231.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1229.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1228.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1227.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1226.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1223.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1222.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1220.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1214.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1206.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1202.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1202.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1194.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1192.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1177.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1175.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1174.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1173.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1168.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1166.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1162.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1150.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1138.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1131.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1128.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1123.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1123.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1123.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1119.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1115.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1113.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1111.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1094.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1093.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1088.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1084.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1083.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1082.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1079.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1074.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1073.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1070.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1070.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1055.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1052.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1051.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1049.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1048.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1041.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1035.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1033.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1032.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1031.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1030.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1027.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1026.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1024.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1014.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1009.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1007.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1005.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 992.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 990.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 968.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 955.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 944.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 943.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 934.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 934.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 932.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 928.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 924.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 916.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 915.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 907.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 906.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 879.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 875.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 873.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 868.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 867.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 864.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 863.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 856.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 849.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 831.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 815.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 814.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 811.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 805.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 791.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 790.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 746.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 742.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 631.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

482.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 482.7
FF:10024-101D6 15,40,85 years, mixed 482.7

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