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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:353.3 nTPM
HPA Brain:285.6 nTPM
GTEx:353.3 nTPM
FANTOM5:229.3 Scaled Tags Per Million
Pig:329.2 nTPM
Mouse:836.4 nTPM
Allen mouse:14.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.6
Sample id Sample description nTPM
Amygdala
nTPM: 285.6
2814 Male, age 76, right hemisphere 347.2
2695 Female, age 67, right hemisphere 293.3
1987 Female, age 91, left hemisphere 276.9
2514 Male, age 75, right hemisphere 267.2
2517 Female, age 94, left hemisphere 243.4
Basal amygdala
nTPM: 238.2
2609 Male, age 75, right hemisphere 282.3
2243 Female, age 91, right hemisphere 268.2
1955 Male, age 76, both hemispheres 247.9
2110 Male, age 80, left hemisphere 243.7
2685 Female, age 94, left hemisphere 222.9
2827 Female, age 67, right hemisphere 164.5
Central amygdala
nTPM: 251.3
1905 Male, age 76, both hemispheres 299.4
2239 Male, age 80, left hemisphere 255.1
2826 Female, age 94, left hemisphere 249.6
2701 Female, age 91, right hemisphere 235.3
2515 Male, age 75, right hemisphere 217.1
Corticomedial amygdala
nTPM: 246.0
2242 Female, age 91, right hemisphere 282.7
2829 Male, age 80, left hemisphere 274.4
2429 Female, age 94, left hemisphere 256.4
2240 Male, age 76, both hemispheres 251.2
2428 Male, age 75, right hemisphere 245.2
2535 Female, age 67, right hemisphere 166.3
Lateral amygdala
nTPM: 227.3
1883 Male, age 76, both hemispheres 320.7
2516 Male, age 75, right hemisphere 276.1
2534 Female, age 94, left hemisphere 250.6
2255 Female, age 91, right hemisphere 190.2
2256 Male, age 80, left hemisphere 178.8
2830 Female, age 67, right hemisphere 147.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 353.3
Samples: 152

Max nTPM: 973.8
Min nTPM: 162.7
Std nTPM: 128.0
Median nTPM: 326.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 973.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 956.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 878.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 852.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 579.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 578.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 577.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 566.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 549.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 528.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 524.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 523.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 516.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 505.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 493.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 482.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 481.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 459.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 459.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 457.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 454.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 447.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 446.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 443.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 441.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 441.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 440.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 438.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 431.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 426.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 421.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 414.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 413.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 410.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 404.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 404.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 394.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 392.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 389.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 388.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 385.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 384.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 384.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 376.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 375.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 375.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 373.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 366.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 364.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 364.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 363.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 363.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 360.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 359.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 357.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 357.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 356.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 354.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 352.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 351.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 347.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 344.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 341.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 340.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 339.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 338.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 338.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 338.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 336.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 334.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 334.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 332.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 330.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 326.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 326.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 326.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 326.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 326.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 325.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 323.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 322.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 322.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 319.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 318.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 317.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 317.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 317.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 317.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 314.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 313.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 312.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 312.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 310.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 309.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 308.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 304.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 304.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 302.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 301.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 301.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 298.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 297.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 295.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 294.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 292.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 290.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 289.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 288.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 286.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 284.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 283.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 281.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 280.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 278.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 277.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 272.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 271.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 270.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 269.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 267.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 266.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 266.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 263.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 261.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 260.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 260.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 257.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 255.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 255.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 255.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 250.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 245.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 242.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 239.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 234.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 232.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 232.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 229.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 229.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 226.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 224.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 222.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 219.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 210.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 206.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 201.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 195.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 194.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 193.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 193.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 190.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 162.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

229.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 229.3
FF:10151-102I7 76 years, female 229.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

329.2
Pig sample Sample description nTPM
Amygdala
nTPM: 329.2
Samples: 4

Max nTPM: 415.0
Min nTPM: 264.3
Sample A Female 415.0
Sample B Female 307.8
Sample C Male 329.8
Sample D Male 264.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

836.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 836.4
Samples: 4

Max nTPM: 930.2
Min nTPM: 751.1
Sample A Male 751.1
Sample B Male 845.4
Sample C Female 930.2
Sample D Female 818.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.2
71724561 Antisense, RP_050927_04_H10, Mouse strain C57BL/6J (56 days, male) 14.2

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