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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:340.3 nTPM
FANTOM5:196.3 Scaled Tags Per Million
Pig:644.3 nTPM
Mouse:864.2 nTPM
Allen mouse:10.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 272.0
2032 Female, age 42, unknown 296.7
2396 Male, age 61, right hemisphere 270.6
2497 Male, age 66, unknown 248.7
Centromedial thalamic nucleus
nTPM: 248.4
2401 Male, age 76, right hemisphere 331.4
2279 Female, age 85, left hemisphere 165.4
Habenula
nTPM: 298.2
1957 Male, age 80, both hemispheres 386.3
2203 Male, age 61, left hemisphere 302.3
2276 Male, age 66, unknown 268.6
2252 Male, age 62, unknown 235.7
Lateral geniculate body
nTPM: 336.5
2106 Female, age 67, right hemisphere 421.7
2399 Male, age 61, left hemisphere 396.7
2035 Female, age 72, unknown 387.3
1953 Male, age 62, unknown 378.5
2857 Male, age 74, right hemisphere 307.0
2575 Female, age 94, right hemisphere 279.1
2659 Male, age 66, unknown 271.4
2841 Male, age 80, both hemispheres 250.2
Lateral thalamic nuclei
nTPM: 298.6
2573 Female, age 94, left hemisphere 364.2
2765 Female, age 67, both hemispheres 343.0
1903 Male, age 76, left hemisphere 300.4
2577 Male, age 74, both hemispheres 242.7
2661 Female, age 72, unknown 242.7
Medial dorsal thalamic nucleus
nTPM: 302.4
2572 Female, age 94, right hemisphere 452.4
1859 Male, age 76, both hemispheres 358.5
2498 Male, age 66, unknown 333.2
1971 Male, age 61, right hemisphere 322.8
1810 Male, age 48, unknown 319.3
2026 Male, age 62, unknown 309.2
2283 Male, age 80, right hemisphere 299.7
1930 Female, age 42, unknown 285.0
2576 Male, age 74, both hemispheres 274.1
2492 Male, age 75, right hemisphere 270.4
2402 Female, age 67, both hemispheres 255.7
2039 Female, age 72, unknown 245.0
2660 Female, age 72, unknown 206.1
Medial geniculate body
nTPM: 287.4
2650 Female, age 94, left hemisphere 397.9
1811 Female, age 42, unknown 332.7
2657 Male, age 74, right hemisphere 285.8
2207 Male, age 80, right hemisphere 272.0
2049 Male, age 76, both hemispheres 264.1
2571 Male, age 75, right hemisphere 231.5
2217 Female, age 72, unknown 228.1
Nucleus reuniens
nTPM: 267.5
2212 Female, age 67, left hemisphere 357.2
2205 Male, age 80, left hemisphere 257.3
2210 Female, age 85, left hemisphere 188.1
Nucleus rhomboideus
nTPM: 240.0
2206 Male, age 80, both hemispheres 312.9
2213 Female, age 67, left hemisphere 240.5
2280 Female, age 85, left hemisphere 166.6
Posterior thalamic nucleus
nTPM: 340.3
2649 Female, age 94, both hemispheres 515.6
2266 Male, age 76, right hemisphere 292.6
2655 Male, age 74, right hemisphere 289.8
2495 Female, age 67, right hemisphere 263.3
Pulvinar
nTPM: 312.3
2398 Male, age 61, left hemisphere 376.1
1972 Male, age 62, unknown 360.5
1932 Male, age 80, right hemisphere 348.7
2724 Male, age 74, right hemisphere 322.8
2214 Male, age 76, right hemisphere 301.0
1929 Male, age 48, unknown 299.8
2499 Male, age 66, unknown 293.8
1899 Female, age 42, unknown 289.5
2496 Female, age 67, right hemisphere 269.9
2582 Female, age 72, unknown 261.2
Subthalamic nucleus
nTPM: 266.2
2124 Male, age 62, unknown 309.7
2658 Male, age 74, both hemispheres 302.1
2282 Male, age 61, both hemispheres 299.0
2406 Female, age 72, unknown 295.8
2275 Male, age 66, unknown 276.7
2779 Female, age 42, unknown 230.8
2056 Female, age 72, unknown 216.1
2216 Male, age 48, unknown 199.1
Ventral posterolateral thalamic nucleus
nTPM: 273.3
2740 Male, age 76, right hemisphere 351.0
2397 Male, age 61, right hemisphere 315.0
2197 Male, age 80, both hemispheres 306.0
2570 Male, age 75, right hemisphere 256.8
2578 Male, age 74, both hemispheres 241.4
2581 Female, age 72, unknown 169.8
Ventral posteromedial thalamic nucleus
nTPM: 274.8
2202 Male, age 61, left hemisphere 352.1
2758 Male, age 80, both hemispheres 276.9
2281 Male, age 75, right hemisphere 261.0
2653 Male, age 74, both hemispheres 252.7
2127 Male, age 76, right hemisphere 231.4
Ventral thalamic nuclei
nTPM: 279.0
1860 Male, age 76, both hemispheres 365.5
1845 Male, age 48, unknown 349.3
1912 Female, age 42, unknown 293.3
2580 Male, age 66, unknown 281.4
2204 Male, age 80, both hemispheres 272.1
2285 Male, age 62, unknown 266.3
2858 Female, age 72, unknown 243.8
2291 Female, age 72, unknown 229.7
2652 Male, age 74, left hemisphere 209.7
Zona incerta
nTPM: 235.5
2822 Male, age 74, right hemisphere 282.3
2215 Male, age 66, unknown 264.4
2208 Male, age 80, right hemisphere 253.9
2403 Male, age 62, unknown 207.8
2663 Female, age 72, unknown 169.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 196.3
FF:10154-103A1 76 years, female 196.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

644.3
Pig sample Sample description nTPM
Thalamus
nTPM: 644.3
Samples: 4

Max nTPM: 870.2
Min nTPM: 451.3
Sample A Female 870.2
Sample B Female 452.7
Sample C Male 802.9
Sample D Male 451.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

864.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 864.2
Samples: 4

Max nTPM: 973.3
Min nTPM: 815.2
Sample A Male 815.2
Sample B Male 851.2
Sample C Female 973.3
Sample D Female 817.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 10.6
71724561 Antisense, RP_050927_04_H10, Mouse strain C57BL/6J (56 days, male) 10.6

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