We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
COX6B1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • COX6B1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:243.3 nTPM
HPA Brain:290.5 nTPM
GTEx:243.3 nTPM
FANTOM5:221.0 Scaled Tags Per Million
Pig:533.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

290.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 290.5
1981 Female, age 72, midline 333.6
2194 Female, age 79, both hemispheres 322.2
2565 Male, age 75, midline 310.3
2048 Male, age 55, midline 246.9
2816 Male, age 47, midline 239.2
Cervical spinal cord, dorsal horn
nTPM: 287.9
2173 Female, age 72, unknown 354.4
2296 Male, age 66, both hemispheres 300.8
2069 Male, age 47, both hemispheres 287.9
2297 Male, age 75, both hemispheres 276.4
2721 Male, age 90, both hemispheres 271.4
1877 Male, age 55, unknown 236.5
Cervical spinal cord, ventral horn
nTPM: 276.1
2098 Female, age 72, unknown 308.9
2068 Male, age 55, unknown 285.0
2820 Female, age 79, both hemispheres 277.4
2480 Male, age 75, both hemispheres 277.2
2809 Male, age 90, both hemispheres 266.0
2295 Male, age 66, both hemispheres 242.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 243.3
Samples: 159

Max nTPM: 413.6
Min nTPM: 142.1
Std nTPM: 55.1
Median nTPM: 238.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 413.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 409.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 407.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 406.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 381.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 354.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 350.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 349.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 348.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 346.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 334.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 329.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 324.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 322.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 319.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 315.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 313.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 311.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 310.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 308.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 303.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 301.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 300.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 296.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 296.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 291.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 291.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 286.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 286.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 285.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 283.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 280.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 279.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 279.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 278.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 278.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 278.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 276.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 276.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 276.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 275.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 274.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 273.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 269.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 269.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 269.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 267.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 266.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 265.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 263.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 262.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 261.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 259.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 259.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 258.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 258.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 256.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 256.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 256.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 255.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 254.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 250.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 249.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 248.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 248.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 246.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 245.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 245.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 244.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 244.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 243.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 242.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 241.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 241.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 241.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 241.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 240.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 240.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 239.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 238.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 237.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 236.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 236.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 235.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 234.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 233.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 230.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 229.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 227.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 227.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 225.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 225.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 224.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 224.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 224.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 221.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 220.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 219.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 218.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 218.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 217.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 216.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 216.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 215.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 215.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 214.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 212.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 212.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 211.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 211.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 210.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 210.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 209.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 208.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 208.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 207.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 207.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 206.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 206.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 205.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 203.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 203.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 201.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 201.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 201.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 201.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 200.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 200.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 199.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 199.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 199.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 198.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 197.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 195.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 192.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 189.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 187.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 184.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 183.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 182.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 181.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 179.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 179.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 175.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 174.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 173.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 173.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 172.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 167.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 166.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 165.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 161.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 159.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 159.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 155.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 154.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 149.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 143.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 142.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

221.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 221.0
FF:10181-103D1 60 years, female 295.5
FF:10159-103A6 76 years, female 146.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

533.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 424.5
Samples: 4

Max nTPM: 444.0
Min nTPM: 403.8
Sample A Female 403.8
Sample B Female 420.4
Sample C Male 429.8
Sample D Male 444.0
Ventral spinal cord
nTPM: 533.8
Samples: 4

Max nTPM: 640.3
Min nTPM: 443.9
Sample A Female 443.9
Sample B Female 640.3
Sample C Male 571.2
Sample D Male 479.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org