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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:298.1 nTPM
HPA Brain:250.3 nTPM
GTEx:298.1 nTPM
FANTOM5:168.5 Scaled Tags Per Million
Pig:375.0 nTPM
Mouse:1.3 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.3
Sample id Sample description nTPM
Amygdala
nTPM: 242.4
2814 Male, age 76, right hemisphere 313.3
2514 Male, age 75, right hemisphere 284.1
2695 Female, age 67, right hemisphere 258.5
2517 Female, age 94, left hemisphere 208.3
1987 Female, age 91, left hemisphere 147.9
Basal amygdala
nTPM: 182.3
2827 Female, age 67, right hemisphere 241.1
2685 Female, age 94, left hemisphere 209.8
2609 Male, age 75, right hemisphere 196.7
2110 Male, age 80, left hemisphere 187.2
1955 Male, age 76, both hemispheres 171.7
2243 Female, age 91, right hemisphere 87.5
Central amygdala
nTPM: 233.7
2826 Female, age 94, left hemisphere 328.5
1905 Male, age 76, both hemispheres 233.6
2239 Male, age 80, left hemisphere 210.5
2515 Male, age 75, right hemisphere 204.4
2701 Female, age 91, right hemisphere 191.6
Corticomedial amygdala
nTPM: 140.9
2428 Male, age 75, right hemisphere 218.4
2429 Female, age 94, left hemisphere 191.2
2535 Female, age 67, right hemisphere 144.3
2240 Male, age 76, both hemispheres 133.6
2829 Male, age 80, left hemisphere 104.6
2242 Female, age 91, right hemisphere 53.3
Lateral amygdala
nTPM: 250.3
2830 Female, age 67, right hemisphere 314.4
2516 Male, age 75, right hemisphere 284.5
2534 Female, age 94, left hemisphere 261.7
2256 Male, age 80, left hemisphere 260.1
1883 Male, age 76, both hemispheres 218.3
2255 Female, age 91, right hemisphere 162.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

298.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 298.1
Samples: 152

Max nTPM: 983.5
Min nTPM: 52.3
Std nTPM: 161.5
Median nTPM: 266.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 983.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 775.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 775.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 705.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 684.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 676.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 659.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 657.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 637.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 610.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 551.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 543.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 541.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 538.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 526.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 506.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 490.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 487.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 481.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 477.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 475.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 472.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 455.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 452.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 445.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 424.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 414.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 411.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 400.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 399.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 398.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 394.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 386.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 378.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 374.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 372.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 369.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 368.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 367.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 362.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 361.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 359.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 358.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 357.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 350.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 350.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 349.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 347.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 346.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 343.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 340.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 338.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 336.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 334.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 333.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 331.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 327.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 325.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 325.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 322.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 314.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 314.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 309.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 303.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 294.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 294.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 291.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 289.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 288.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 288.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 285.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 285.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 273.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 270.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 269.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 267.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 264.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 261.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 256.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 251.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 249.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 247.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 247.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 247.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 240.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 238.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 237.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 233.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 229.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 225.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 225.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 222.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 221.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 220.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 215.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 215.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 214.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 211.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 211.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 210.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 210.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 209.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 208.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 205.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 205.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 203.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 197.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 196.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 191.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 188.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 187.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 179.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 176.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 176.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 175.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 173.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 165.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 164.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 160.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 159.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 153.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 153.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 153.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 148.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 145.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 145.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 144.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 143.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 142.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 141.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 139.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 138.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 138.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 137.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 134.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 133.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 131.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 125.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 123.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 120.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 120.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 113.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 109.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 104.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 86.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 65.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 52.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 168.5
FF:10151-102I7 76 years, female 168.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.0
Pig sample Sample description nTPM
Amygdala
nTPM: 375.0
Samples: 4

Max nTPM: 426.8
Min nTPM: 338.7
Sample A Female 426.8
Sample B Female 388.6
Sample C Male 346.0
Sample D Male 338.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.6
Sample A Male 1.8
Sample B Male 0.6
Sample C Female 1.6
Sample D Female 1.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
68522503 Antisense, RP_050118_02_B09, Mouse strain C57BL/6J (56 days, male) 0.1

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