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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:466.4 nTPM
FANTOM5:351.5 Scaled Tags Per Million
Pig:260.6 nTPM
Allen mouse:0.1 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.4
Sample id Sample description nTPM
Area postrema
nTPM: 287.3
2306 Male, age 80, both hemispheres 415.0
2799 Male, age 61, both hemispheres 226.0
2054 Male, age 76, both hemispheres 220.8
Dorsal medullary reticular nucleus
nTPM: 377.2
2373 Male, age 61, both hemispheres 428.2
2040 Female, age 85, both hemispheres 387.5
2088 Male, age 76, both hemispheres 316.0
Dorsal motor vagal complex
nTPM: 299.0
2797 Male, age 61, both hemispheres 367.2
2185 Male, age 76, both hemispheres 363.5
2000 Male, age 74, unknown 326.4
2807 Female, age 85, both hemispheres 322.0
2133 Female, age 91, both hemispheres 290.6
2643 Male, age 74, both hemispheres 278.4
2813 Female, age 72, unknown 258.6
2844 Male, age 55, unknown 185.2
Gigantocellular reticular nuclei, medullary
nTPM: 346.8
2314 Male, age 61, both hemispheres 468.8
2387 Female, age 91, both hemispheres 415.3
1876 Female, age 85, both hemispheres 357.5
2022 Male, age 76, right hemisphere 356.0
2310 Male, age 80, both hemispheres 290.6
2462 Male, age 74, both hemispheres 192.6
Gigantocellular reticular nuclei, pars
nTPM: 278.9
2336 Male, age 61, both hemispheres 350.7
2330 Male, age 80, both hemispheres 299.4
2706 Male, age 80, both hemispheres 297.5
2084 Female, age 85, both hemispheres 254.1
2168 Male, age 76, both hemispheres 192.7
Inferior olive
nTPM: 391.2
2178 Male, age 61, both hemispheres 466.1
2628 Female, age 91, both hemispheres 423.2
2379 Male, age 80, both hemispheres 361.8
2563 Male, age 74, both hemispheres 353.8
2085 Female, age 85, both hemispheres 351.3
Lateral medullary reticular nucleus
nTPM: 416.0
2374 Male, age 61, both hemispheres 575.3
2852 Male, age 80, both hemispheres 449.1
2044 Male, age 76, both hemispheres 401.6
2190 Female, age 85, both hemispheres 396.4
2305 Male, age 74, both hemispheres 356.8
2804 Female, age 91, both hemispheres 316.8
Medial olivary nucleus
nTPM: 390.3
1943 Male, age 61, both hemispheres 532.4
2851 Male, age 80, both hemispheres 381.9
2138 Female, age 91, both hemispheres 336.4
1962 Male, age 76, both hemispheres 310.5
Medial vestibular nucleus
nTPM: 327.3
2803 Female, age 91, both hemispheres 439.2
2624 Male, age 61, both hemispheres 379.4
2801 Male, age 74, both hemispheres 360.6
2093 Male, age 80, both hemispheres 357.4
2743 Female, age 85, both hemispheres 236.5
2134 Male, age 76, both hemispheres 190.6
Motor hypoglossal nucleus
nTPM: 343.8
2132 Female, age 85, both hemispheres 448.4
2182 Male, age 80, both hemispheres 411.2
2125 Female, age 91, both hemispheres 407.6
2461 Male, age 61, both hemispheres 311.2
2277 Male, age 76, both hemispheres 140.6
Nucleus ambiguus
nTPM: 384.2
2071 Male, age 76, both hemispheres 448.7
2096 Female, age 85, both hemispheres 319.7
Nucleus cuneatus
nTPM: 345.5
2381 Male, age 80, both hemispheres 435.6
2380 Male, age 80, both hemispheres 415.4
2808 Female, age 85, both hemispheres 403.9
2376 Male, age 61, both hemispheres 372.2
2100 Male, age 76, both hemispheres 328.2
2562 Male, age 61, both hemispheres 301.0
2805 Female, age 91, both hemispheres 297.1
2564 Male, age 74, both hemispheres 278.6
2131 Male, age 76, both hemispheres 277.6
Nucleus gracilis
nTPM: 430.0
2382 Male, age 80, both hemispheres 547.8
2299 Female, age 85, both hemispheres 390.2
2627 Male, age 74, both hemispheres 352.1
Nucleus raphe obscurus
nTPM: 412.4
2800 Male, age 61, midline 458.5
2845 Female, age 85, midline 453.8
2142 Male, age 76, midline 324.9
Nucleus raphe pallidus
nTPM: 345.9
1924 Male, age 61, midline 385.9
2183 Male, age 80, midline 362.0
2145 Male, age 76, midline 289.6
Nucleus tractus solitarii
nTPM: 202.2
2307 Male, age 80, both hemispheres 248.1
2191 Female, age 85, both hemispheres 217.2
2656 Male, age 76, both hemispheres 188.3
2144 Female, age 91, right hemisphere 155.2
Parvicellular reticular nuclei
nTPM: 225.8
2119 Male, age 80, both hemispheres 272.6
2095 Male, age 76, both hemispheres 250.0
2558 Male, age 74, both hemispheres 154.8
Parvicellular reticular nuclei, medullary
nTPM: 308.9
2189 Female, age 91, both hemispheres 323.6
2181 Male, age 80, left hemisphere 305.3
2091 Female, age 85, both hemispheres 297.8
Peritrigeminal nucleus
nTPM: 356.7
2179 Male, age 61, both hemispheres 381.3
2136 Male, age 76, both hemispheres 348.4
2067 Female, age 85, both hemispheres 340.5
Prepositus hypoglossal nucleus
nTPM: 315.6
2855 Female, age 85, right hemisphere 363.1
2086 Male, age 80, both hemispheres 268.1
Spinal trigeminal nucleus, caudal
nTPM: 361.7
2312 Male, age 61, both hemispheres 440.3
2308 Male, age 80, both hemispheres 412.9
2390 Female, age 91, both hemispheres 348.6
2447 Male, age 76, both hemispheres 307.3
2642 Male, age 74, both hemispheres 299.5
Spinal trigeminal nucleus, interpolar
nTPM: 291.4
2386 Female, age 85, both hemispheres 345.8
2033 Male, age 80, both hemispheres 316.8
2389 Female, age 91, both hemispheres 312.5
2625 Male, age 61, both hemispheres 245.4
2066 Male, age 76, right hemisphere 236.4
Spinal vestibular nucleus
nTPM: 396.6
2748 Male, age 76, both hemispheres 520.5
2806 Female, age 85, both hemispheres 453.0
2186 Female, age 91, both hemispheres 403.1
2780 Male, age 80, both hemispheres 353.5
2384 Male, age 74, both hemispheres 339.9
2796 Male, age 61, both hemispheres 309.4
Superior vestibular nucleus
nTPM: 259.5
2015 Male, age 80, both hemispheres 307.9
2061 Male, age 76, both hemispheres 235.4
2383 Male, age 74, both hemispheres 235.2
Ventral medullary reticular nucleus
nTPM: 466.4
2372 Male, age 61, both hemispheres 505.6
2060 Male, age 76, both hemispheres 427.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 367.5
2118 Male, age 80, both hemispheres 426.8
2180 Male, age 61, both hemispheres 414.7
2302 Female, age 91, both hemispheres 336.8
1986 Male, age 76, both hemispheres 333.6
2741 Female, age 85, both hemispheres 325.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

351.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 351.5
FF:10038-101F2 18-64 years, mixed 526.4
FF:10174-103C3 60 years, female 328.3
FF:10155-103A2 76 years, female 199.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 260.6
Samples: 4

Max nTPM: 333.6
Min nTPM: 181.5
Sample A Female 181.5
Sample B Female 255.6
Sample C Male 271.6
Sample D Male 333.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.1
68522503 Antisense, RP_050118_02_B09, Mouse strain C57BL/6J (56 days, male) 0.1

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