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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:576.9 nTPM
HPA Brain:298.8 nTPM
GTEx:576.9 nTPM
FANTOM5:207.3 Scaled Tags Per Million
Pig:252.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

298.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 244.3
1981 Female, age 72, midline 335.6
2194 Female, age 79, both hemispheres 276.8
2048 Male, age 55, midline 218.9
2565 Male, age 75, midline 197.1
2816 Male, age 47, midline 193.1
Cervical spinal cord, dorsal horn
nTPM: 295.5
2173 Female, age 72, unknown 447.7
2296 Male, age 66, both hemispheres 318.7
2069 Male, age 47, both hemispheres 295.7
2297 Male, age 75, both hemispheres 279.6
1877 Male, age 55, unknown 249.5
2721 Male, age 90, both hemispheres 181.7
Cervical spinal cord, ventral horn
nTPM: 298.8
2480 Male, age 75, both hemispheres 346.1
2068 Male, age 55, unknown 327.5
2295 Male, age 66, both hemispheres 315.9
2820 Female, age 79, both hemispheres 311.0
2809 Male, age 90, both hemispheres 289.9
2098 Female, age 72, unknown 202.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

576.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 576.9
Samples: 159

Max nTPM: 1528.6
Min nTPM: 166.5
Std nTPM: 219.9
Median nTPM: 549.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1528.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1174.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1137.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1134.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1132.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1014.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1004.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 985.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 976.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 961.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 935.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 929.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 925.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 917.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 893.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 865.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 862.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 852.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 845.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 830.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 823.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 800.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 786.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 785.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 776.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 771.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 771.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 763.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 759.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 755.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 752.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 751.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 750.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 747.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 732.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 726.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 710.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 709.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 708.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 705.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 700.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 693.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 683.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 673.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 663.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 658.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 655.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 655.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 647.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 644.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 640.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 636.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 620.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 617.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 614.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 611.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 607.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 605.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 595.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 594.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 593.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 592.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 590.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 590.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 589.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 588.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 588.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 584.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 584.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 577.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 576.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 570.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 566.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 566.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 563.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 559.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 558.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 554.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 551.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 549.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 547.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 543.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 534.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 533.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 532.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 530.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 528.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 527.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 525.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 520.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 520.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 507.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 505.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 503.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 501.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 499.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 495.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 494.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 494.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 490.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 479.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 472.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 468.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 468.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 463.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 463.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 463.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 462.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 462.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 459.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 458.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 457.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 450.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 450.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 441.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 437.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 436.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 433.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 433.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 431.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 430.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 427.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 426.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 425.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 424.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 418.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 416.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 410.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 399.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 396.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 388.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 387.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 384.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 377.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 375.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 372.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 361.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 351.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 349.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 347.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 340.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 334.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 331.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 327.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 321.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 316.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 298.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 289.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 283.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 270.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 268.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 261.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 259.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 257.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 235.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 216.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 168.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 167.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 166.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

207.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 207.3
FF:10181-103D1 60 years, female 295.8
FF:10159-103A6 76 years, female 118.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 204.1
Samples: 4

Max nTPM: 241.6
Min nTPM: 171.1
Sample A Female 208.7
Sample B Female 241.6
Sample C Male 171.1
Sample D Male 195.0
Ventral spinal cord
nTPM: 252.8
Samples: 4

Max nTPM: 269.4
Min nTPM: 240.7
Sample A Female 244.8
Sample B Female 269.4
Sample C Male 256.4
Sample D Male 240.7

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