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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1789.7 nTPM
HPA Brain:1352.4 nTPM
GTEx:1789.7 nTPM
FANTOM5:1124.1 Scaled Tags Per Million
Pig:1429.0 nTPM
Mouse:855.6 nTPM
Allen mouse:25.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1352.4
Sample id Sample description nTPM
Amygdala
nTPM: 1352.4
2695 Female, age 67, right hemisphere 1646.3
2514 Male, age 75, right hemisphere 1517.4
1987 Female, age 91, left hemisphere 1313.6
2814 Male, age 76, right hemisphere 1159.4
2517 Female, age 94, left hemisphere 1125.4
Basal amygdala
nTPM: 1069.3
2609 Male, age 75, right hemisphere 1724.3
2243 Female, age 91, right hemisphere 1291.7
1955 Male, age 76, both hemispheres 1057.6
2110 Male, age 80, left hemisphere 1033.5
2685 Female, age 94, left hemisphere 769.1
2827 Female, age 67, right hemisphere 539.7
Central amygdala
nTPM: 1298.6
2515 Male, age 75, right hemisphere 1532.9
2701 Female, age 91, right hemisphere 1430.4
2826 Female, age 94, left hemisphere 1255.0
2239 Male, age 80, left hemisphere 1144.2
1905 Male, age 76, both hemispheres 1130.2
Corticomedial amygdala
nTPM: 1021.3
2428 Male, age 75, right hemisphere 1438.3
2242 Female, age 91, right hemisphere 1281.9
2829 Male, age 80, left hemisphere 1047.9
2429 Female, age 94, left hemisphere 854.6
2240 Male, age 76, both hemispheres 790.7
2535 Female, age 67, right hemisphere 714.4
Lateral amygdala
nTPM: 1144.4
2516 Male, age 75, right hemisphere 1532.3
2255 Female, age 91, right hemisphere 1415.1
2256 Male, age 80, left hemisphere 1293.7
2534 Female, age 94, left hemisphere 1037.2
1883 Male, age 76, both hemispheres 1022.1
2830 Female, age 67, right hemisphere 565.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1789.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1789.7
Samples: 152

Max nTPM: 5381.2
Min nTPM: 155.0
Std nTPM: 879.3
Median nTPM: 1711.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5381.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 4216.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 4212.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3816.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 3498.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3442.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3411.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3264.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 3259.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3161.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3144.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3095.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3041.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2981.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2975.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2851.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2841.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2837.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2825.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2781.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2755.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2754.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2713.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2699.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2690.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2689.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2565.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2491.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2490.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2480.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2462.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2450.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2423.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2381.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2336.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2332.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2310.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2302.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2297.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2261.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2258.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2204.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2191.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2187.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2183.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2182.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2177.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2161.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2159.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2145.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2118.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2091.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2090.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2090.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2054.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2027.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1943.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1942.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1931.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1922.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1889.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1854.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1854.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1848.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1846.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1829.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1811.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1809.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1790.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1774.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1773.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1773.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1756.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1735.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1729.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1719.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1704.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1670.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1668.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1657.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1638.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1636.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1589.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1563.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1559.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1559.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1514.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1512.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1511.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1509.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1504.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1498.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1489.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1484.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1475.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1473.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1457.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1447.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1435.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1418.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1411.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1397.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1391.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1332.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1330.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1304.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1299.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1296.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1277.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1263.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1239.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1226.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1184.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1184.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1181.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1175.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1163.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1145.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1133.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1110.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1105.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1104.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1057.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1026.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1021.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 983.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 981.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 965.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 941.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 908.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 830.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 815.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 787.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 780.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 745.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 687.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 673.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 665.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 625.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 620.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 597.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 509.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 502.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 483.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 473.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 460.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 453.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 441.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 326.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 264.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 214.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 155.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1124.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1124.1
FF:10151-102I7 76 years, female 1124.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1429.0
Pig sample Sample description nTPM
Amygdala
nTPM: 1429.0
Samples: 4

Max nTPM: 1790.0
Min nTPM: 1151.3
Sample A Female 1790.0
Sample B Female 1333.0
Sample C Male 1441.7
Sample D Male 1151.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

855.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 855.6
Samples: 4

Max nTPM: 1032.3
Min nTPM: 754.7
Sample A Male 843.0
Sample B Male 754.7
Sample C Female 1032.3
Sample D Female 792.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.8
67936406 Antisense, RP_040604_02_C10, Mouse strain C57BL/6J (56 days, male) 31.0
77620395 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 20.5
79490110 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 16.8

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