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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
2007.5
nTPM
FANTOM5:
1267.1
Scaled Tags Per Million
Pig:
1606.0
nTPM
Allen mouse:
20.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2007.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 774.3
2301
Female, age 85, both hemispheres
835.3
2090
Male, age 80, both hemispheres
828.8
1984
Male, age 76, both hemispheres
779.2
2188
Female, age 91, both hemispheres
654.1
Dorsal cochlear nucleus nTPM: 839.8
2370
Male, age 61, both hemispheres
1282.6
2058
Male, age 76, both hemispheres
840.1
2187
Female, age 91, both hemispheres
766.6
2378
Male, age 80, both hemispheres
687.8
2802
Male, age 74, right hemisphere
621.6
Dorsal tegmental nucleus nTPM: 1383.6
2358
Male, age 61, both hemispheres
1805.4
1936
Male, age 76, left hemisphere
1465.2
2083
Male, age 80, both hemispheres
1278.3
2326
Male, age 74, both hemispheres
985.5
Dorsolateral tegmental area nTPM: 2007.5
2337
Male, age 61, both hemispheres
5183.6
2141
Male, age 76, both hemispheres
1345.3
2654
Male, age 80, both hemispheres
1315.8
2751
Female, age 85, both hemispheres
1181.9
2360
Male, age 74, both hemispheres
1010.8
Kolliker-Fuse nucleus nTPM: 1046.7
2315
Male, age 76, right hemisphere
1370.0
2163
Male, age 80, both hemispheres
1216.9
2793
Female, age 91, left hemisphere
553.2
Lateral lemniscal nuclei nTPM: 709.9
2746
Female, age 85, left hemisphere
1491.5
2169
Male, age 76, both hemispheres
615.1
2453
Male, age 74, right hemisphere
588.7
2320
Female, age 91, left hemisphere
519.0
2036
Male, age 80, both hemispheres
335.4
Lateral parabrachial nucleus nTPM: 1111.9
2139
Female, age 85, right hemisphere
1350.0
2013
Male, age 80, both hemispheres
1316.2
2792
Male, age 76, both hemispheres
1033.6
2790
Male, age 61, both hemispheres
747.7
Lateral vestibular nucleus nTPM: 1178.2
2184
Male, age 76, both hemispheres
1271.2
2311
Male, age 80, both hemispheres
1085.2
Locus coeruleus nTPM: 1401.1
2317
Female, age 72, unknown
1906.1
2014
Male, age 55, unknown
1751.9
1980
Male, age 76, both hemispheres
1723.8
2123
Female, age 91, both hemispheres
1363.6
2162
Male, age 80, both hemispheres
1096.1
2720
Male, age 74, both hemispheres
1045.5
2788
Male, age 74, unknown
920.5
Medial parabrachial nucleus nTPM: 1184.9
2786
Male, age 76, both hemispheres
1359.5
2463
Female, age 85, right hemisphere
1308.5
2156
Male, age 61, both hemispheres
1250.1
2170
Female, age 91, both hemispheres
1066.8
2854
Male, age 80, both hemispheres
939.5
Medial periolivary nuclei nTPM: 781.1
2081
Male, age 80, both hemispheres
1447.4
2063
Male, age 76, both hemispheres
728.8
2791
Male, age 74, right hemisphere
617.0
2171
Female, age 85, both hemispheres
616.0
2458
Female, age 91, both hemispheres
496.5
Motor facial nucleus nTPM: 659.9
2126
Male, age 61, both hemispheres
990.1
2062
Male, age 76, both hemispheres
852.9
2365
Male, age 74, right hemisphere
678.9
2697
Female, age 85, both hemispheres
531.0
2795
Female, age 91, both hemispheres
501.0
2327
Male, age 80, both hemispheres
405.2
Motor trigeminal nucleus nTPM: 1027.9
2335
Male, age 61, both hemispheres
1683.8
2309
Male, age 76, both hemispheres
1224.5
2079
Male, age 80, both hemispheres
1018.0
2560
Male, age 74, both hemispheres
641.6
2321
Female, age 91, both hemispheres
571.5
Nuclei of the trapezoid body nTPM: 700.2
1983
Male, age 76, both hemispheres
955.4
2159
Male, age 61, both hemispheres
790.3
2166
Male, age 80, both hemispheres
703.1
2735
Female, age 85, both hemispheres
609.5
2368
Female, age 91, both hemispheres
442.5
Nucleus raphe magnus nTPM: 722.2
2051
Male, age 76, both hemispheres
1545.2
2455
Male, age 74, both hemispheres
732.0
2328
Male, age 80, both hemispheres
586.6
2160
Male, age 61, both hemispheres
582.6
2172
Female, age 85, both hemispheres
471.2
2459
Female, age 91, both hemispheres
415.7
Paramedian reticular nucleus nTPM: 838.2
2313
Male, age 61, both hemispheres
1235.6
2057
Male, age 80, both hemispheres
812.6
2052
Male, age 76, both hemispheres
693.8
2050
Female, age 85, both hemispheres
610.8
Pedunculopontine tegmental nucleus nTPM: 1477.1
2338
Male, age 61, both hemispheres
1898.4
1921
Female, age 85, both hemispheres
1295.5
2334
Male, age 80, both hemispheres
1237.3
Pontine nuclei nTPM: 799.7
2115
Male, age 80, left hemisphere
1784.7
1968
Male, age 76, left hemisphere
959.5
2787
Female, age 85, both hemispheres
826.1
2319
Female, age 91, both hemispheres
699.7
1863
Male, age 55, unknown
666.2
2727
Male, age 61, right hemisphere
606.2
2109
Female, age 72, unknown
534.1
2454
Male, age 74, left hemisphere
321.5
Pontine raphe nucleus nTPM: 1160.8
2853
Male, age 76, midline
1550.5
2122
Female, age 85, midline
771.0
Posteroventral cochlear nucleus nTPM: 983.3
2371
Male, age 61, both hemispheres
1346.1
2070
Male, age 76, both hemispheres
1100.5
2752
Female, age 85, both hemispheres
973.6
2341
Male, age 80, both hemispheres
784.1
2135
Female, age 91, both hemispheres
712.2
Principal sensory trigeminal nucleus nTPM: 822.5
2324
Male, age 76, both hemispheres
1509.3
2008
Male, age 80, left hemisphere
627.1
2367
Female, age 91, left hemisphere
603.3
2158
Male, age 61, both hemispheres
550.2
Reticular pontine nucleus, caudal nTPM: 671.8
2092
Male, age 76, both hemispheres
834.5
2559
Male, age 74, both hemispheres
692.6
2332
Male, age 80, right hemisphere
667.2
2457
Female, age 91, both hemispheres
493.0
Reticular pontine nucleus, oral nTPM: 909.6
1939
Male, age 80, both hemispheres
1394.8
2167
Male, age 76, both hemispheres
1370.5
2012
Female, age 85, both hemispheres
899.7
2366
Female, age 91, both hemispheres
470.4
2361
Male, age 74, both hemispheres
412.3
Reticulotegmental nucleus nTPM: 1013.0
2325
Male, age 76, both hemispheres
1209.0
2333
Male, age 80, both hemispheres
1200.0
2452
Male, age 74, both hemispheres
919.5
2322
Female, age 91, both hemispheres
723.5
Spinal trigeminal nucleus, oral nTPM: 1005.9
1978
Male, age 76, both hemispheres
1105.4
2737
Female, age 85, both hemispheres
1006.6
2164
Male, age 80, both hemispheres
905.8
Subcoeruleus area nTPM: 1103.8
2451
Male, age 74, both hemispheres
1361.2
2323
Female, age 91, left hemisphere
1256.9
2369
Female, age 85, left hemisphere
1129.7
1958
Male, age 80, both hemispheres
1017.2
2089
Male, age 76, left hemisphere
754.1
Superior olive nTPM: 646.0
2020
Male, age 76, both hemispheres
762.8
2561
Female, age 91, both hemispheres
692.0
2364
Male, age 74, right hemisphere
683.3
2329
Male, age 80, right hemisphere
625.6
1875
Female, age 85, both hemispheres
466.3
Ventral periolivary nuclei nTPM: 603.6
2023
Male, age 76, both hemispheres
681.8
2165
Male, age 80, both hemispheres
658.3
2794
Female, age 91, left hemisphere
561.6
2130
Female, age 85, both hemispheres
512.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 921.8
2359
Male, age 61, both hemispheres
1613.4
2161
Male, age 80, both hemispheres
1160.8
2840
Female, age 85, both hemispheres
923.1
1959
Male, age 76, both hemispheres
717.8
2449
Male, age 74, both hemispheres
654.7
2456
Female, age 91, both hemispheres
460.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1606.0
Pig sample
Sample description
nTPM
Pons nTPM: 1606.0
Samples: 4
Max nTPM: 1832.9
Min nTPM: 1401.6
Sample A
Female
1525.6
Sample B
Female
1401.6
Sample C
Male
1832.9
Sample D
Male
1663.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
