MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2687.4 nTPM
HPA Brain:1855.3 nTPM
GTEx:2687.4 nTPM
FANTOM5:1566.9 Scaled Tags Per Million
Pig:1518.5 nTPM
Mouse:417.2 nTPM
Allen mouse:23.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1855.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1297.7
2586 Male, age 75, left hemisphere 2215.7
2828 Female, age 72, unknown 1706.5
2219 Male, age 76, both hemispheres 1332.9
2666 Male, age 74, left hemisphere 1284.7
1833 Male, age 53, unknown 1247.6
1827 Male, age 72, unknown 1146.3
1870 Female, age 42, unknown 1129.8
1830 Male, age 51, unknown 1066.1
2411 Female, age 72, unknown 1061.4
2019 Male, age 18, unknown 786.2
Dorsal raphe nucleus
nTPM: 1608.3
2047 Male, age 72, unknown 1803.6
2298 Female, age 72, unknown 1757.5
2016 Female, age 72, unknown 1639.4
2750 Male, age 76, both hemispheres 1489.3
1828 Male, age 53, unknown 1351.6
Inferior colliculus
nTPM: 1241.8
1848 Female, age 42, unknown 1274.0
1890 Male, age 53, unknown 1254.3
2097 Female, age 72, unknown 1221.4
2849 Male, age 72, unknown 1217.6
Median raphe nucleus
nTPM: 1584.5
2220 Male, age 76, midline 1584.5
Periaquaductal grey, anterior
nTPM: 1473.9
1795 Male, age 51, unknown 1591.0
1947 Male, age 18, unknown 1458.5
2502 Female, age 75, unknown 1372.1
Periaquaductal grey, dorsal
nTPM: 1326.8
1840 Male, age 53, unknown 1734.8
2850 Male, age 76, both hemispheres 1371.8
2464 Female, age 72, unknown 1135.4
1831 Male, age 72, unknown 1065.2
Periaquaductal grey, lateral
nTPM: 1261.6
2140 Male, age 76, both hemispheres 1376.1
2272 Male, age 74, both hemispheres 1240.4
2053 Male, age 18, unknown 1168.3
Pretectal area
nTPM: 1218.8
2224 Female, age 72, unknown 1576.2
2825 Male, age 18, unknown 1498.4
1817 Female, age 42, unknown 1445.1
2007 Male, age 72, unknown 1215.2
1944 Female, age 72, unknown 1212.4
1815 Male, age 53, unknown 1195.4
2667 Female, age 75, unknown 1181.5
1816 Male, age 51, unknown 1153.7
2316 Male, age 76, right hemisphere 1123.2
2273 Male, age 74, both hemispheres 971.2
2407 Male, age 75, both hemispheres 834.3
Red nucleus
nTPM: 1434.4
2227 Male, age 72, unknown 1780.3
2769 Male, age 72, unknown 1763.3
2503 Female, age 72, unknown 1731.7
2584 Male, age 75, left hemisphere 1580.3
1954 Female, age 42, unknown 1497.4
2725 Female, age 75, unknown 1460.9
1904 Male, age 53, unknown 1455.3
2823 Male, age 76, right hemisphere 1416.5
1821 Female, age 72, unknown 1330.5
1865 Male, age 51, unknown 1287.8
2785 Male, age 18, unknown 955.2
2588 Male, age 74, left hemisphere 954.1
Substantia nigra
nTPM: 1855.3
2699 Male, age 18, unknown 3098.2
1916 Female, age 42, unknown 2664.8
1851 Male, age 51, unknown 2241.5
2665 Male, age 74, both hemispheres 1782.6
2590 Female, age 75, unknown 1612.9
2583 Male, age 75, right hemisphere 1579.6
2409 Female, age 72, unknown 1548.3
1889 Female, age 72, unknown 1495.0
2241 Male, age 72, unknown 1349.5
1941 Male, age 53, unknown 1181.0
Superior colliculus
nTPM: 1133.6
1796 Male, age 53, unknown 1468.3
2261 Male, age 18, unknown 1305.4
2668 Female, age 75, unknown 1290.8
2087 Female, age 72, unknown 1255.2
2664 Male, age 75, both hemispheres 1189.0
1995 Male, age 72, unknown 1104.7
1839 Male, age 51, unknown 985.3
2587 Male, age 74, left hemisphere 953.6
1913 Female, age 42, unknown 936.3
1895 Male, age 76, right hemisphere 847.1
Ventral tegmental area
nTPM: 1522.4
1915 Female, age 42, unknown 2020.4
1942 Male, age 51, unknown 1659.2
2218 Male, age 76, both hemispheres 1538.3
2021 Male, age 53, unknown 1466.9
2410 Female, age 72, unknown 1278.5
2223 Female, age 72, unknown 1171.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2687.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2687.4
Samples: 139

Max nTPM: 8735.8
Min nTPM: 142.5
Std nTPM: 1562.8
Median nTPM: 2553.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8735.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 7620.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7382.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 6747.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 6258.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 5733.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 5561.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 5328.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5255.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5253.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 5209.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1566.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1566.9
FF:10158-103A5 76 years, female 1566.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1518.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1497.1
Samples: 4

Max nTPM: 1732.5
Min nTPM: 1273.0
Sample A Female 1732.5
Sample B Female 1273.0
Sample C Male 1550.7
Sample D Male 1432.3
Midbrain
nTPM: 1493.4
Samples: 4

Max nTPM: 1881.5
Min nTPM: 1001.1
Sample A Female 1881.5
Sample B Female 1869.2
Sample C Male 1221.8
Sample D Male 1001.1
Periaqueductal gray
nTPM: 1518.5
Samples: 3

Max nTPM: 1662.0
Min nTPM: 1232.7
Sample B Female 1662.0
Sample C Male 1660.9
Sample D Male 1232.7
Superior colliculi
nTPM: 1144.4
Samples: 4

Max nTPM: 1397.1
Min nTPM: 759.8
Sample A Female 1397.1
Sample B Female 759.8
Sample C Male 1166.5
Sample D Male 1254.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 417.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 417.3
Samples: 4

Max nTPM: 569.8
Min nTPM: 318.5
Sample A Male 569.8
Sample B Male 393.1
Sample C Female 318.5
Sample D Female 387.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.2
67936406 Antisense, RP_040604_02_C10, Mouse strain C57BL/6J (56 days, male) 28.0
77620395 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 18.4
79490110 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 15.5

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