PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:2007.5 nTPM
FANTOM5:1267.1 Scaled Tags Per Million
Pig:1606.0 nTPM
Mouse:642.2 nTPM
Allen mouse:20.1 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 2007.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 774.3
2301 Female, age 85, both hemispheres 835.3
2090 Male, age 80, both hemispheres 828.8
1984 Male, age 76, both hemispheres 779.2
2188 Female, age 91, both hemispheres 654.1
Area postrema
nTPM: 1797.1
2799 Male, age 61, both hemispheres 2821.9
2306 Male, age 80, both hemispheres 1517.7
2054 Male, age 76, both hemispheres 1051.5
Dorsal cochlear nucleus
nTPM: 839.8
2370 Male, age 61, both hemispheres 1282.6
2058 Male, age 76, both hemispheres 840.1
2187 Female, age 91, both hemispheres 766.6
2378 Male, age 80, both hemispheres 687.8
2802 Male, age 74, right hemisphere 621.6
Dorsal medullary reticular nucleus
nTPM: 918.6
2088 Male, age 76, both hemispheres 1091.3
2373 Male, age 61, both hemispheres 956.4
2040 Female, age 85, both hemispheres 708.1
Dorsal motor vagal complex
nTPM: 1191.9
2185 Male, age 76, both hemispheres 1678.1
2797 Male, age 61, both hemispheres 1564.7
2844 Male, age 55, unknown 1372.1
2643 Male, age 74, both hemispheres 1189.5
2813 Female, age 72, unknown 1145.0
2000 Male, age 74, unknown 992.3
2133 Female, age 91, both hemispheres 917.9
2807 Female, age 85, both hemispheres 675.3
Dorsal tegmental nucleus
nTPM: 1383.6
2358 Male, age 61, both hemispheres 1805.4
1936 Male, age 76, left hemisphere 1465.2
2083 Male, age 80, both hemispheres 1278.3
2326 Male, age 74, both hemispheres 985.5
Dorsolateral tegmental area
nTPM: 2007.5
2337 Male, age 61, both hemispheres 5183.6
2141 Male, age 76, both hemispheres 1345.3
2654 Male, age 80, both hemispheres 1315.8
2751 Female, age 85, both hemispheres 1181.9
2360 Male, age 74, both hemispheres 1010.8
Gigantocellular reticular nuclei, medullary
nTPM: 814.0
2314 Male, age 61, both hemispheres 1114.8
2022 Male, age 76, right hemisphere 1077.2
1876 Female, age 85, both hemispheres 839.7
2310 Male, age 80, both hemispheres 746.1
2462 Male, age 74, both hemispheres 724.5
2387 Female, age 91, both hemispheres 381.8
Gigantocellular reticular nuclei, pars
nTPM: 843.2
2084 Female, age 85, both hemispheres 1153.0
2336 Male, age 61, both hemispheres 985.2
2330 Male, age 80, both hemispheres 752.4
2706 Male, age 80, both hemispheres 729.4
2168 Male, age 76, both hemispheres 596.1
Inferior olive
nTPM: 1083.3
2085 Female, age 85, both hemispheres 1338.5
2178 Male, age 61, both hemispheres 1233.7
2563 Male, age 74, both hemispheres 1145.9
2379 Male, age 80, both hemispheres 887.2
2628 Female, age 91, both hemispheres 811.4
Kolliker-Fuse nucleus
nTPM: 1046.7
2315 Male, age 76, right hemisphere 1370.0
2163 Male, age 80, both hemispheres 1216.9
2793 Female, age 91, left hemisphere 553.2
Lateral lemniscal nuclei
nTPM: 709.9
2746 Female, age 85, left hemisphere 1491.5
2169 Male, age 76, both hemispheres 615.1
2453 Male, age 74, right hemisphere 588.7
2320 Female, age 91, left hemisphere 519.0
2036 Male, age 80, both hemispheres 335.4
Lateral medullary reticular nucleus
nTPM: 1123.5
2852 Male, age 80, both hemispheres 1579.2
2305 Male, age 74, both hemispheres 1248.5
2374 Male, age 61, both hemispheres 1192.7
2044 Male, age 76, both hemispheres 917.3
2804 Female, age 91, both hemispheres 906.9
2190 Female, age 85, both hemispheres 896.2
Lateral parabrachial nucleus
nTPM: 1111.9
2139 Female, age 85, right hemisphere 1350.0
2013 Male, age 80, both hemispheres 1316.2
2792 Male, age 76, both hemispheres 1033.6
2790 Male, age 61, both hemispheres 747.7
Lateral vestibular nucleus
nTPM: 1178.2
2184 Male, age 76, both hemispheres 1271.2
2311 Male, age 80, both hemispheres 1085.2
Locus coeruleus
nTPM: 1401.1
2317 Female, age 72, unknown 1906.1
2014 Male, age 55, unknown 1751.9
1980 Male, age 76, both hemispheres 1723.8
2123 Female, age 91, both hemispheres 1363.6
2162 Male, age 80, both hemispheres 1096.1
2720 Male, age 74, both hemispheres 1045.5
2788 Male, age 74, unknown 920.5
Medial olivary nucleus
nTPM: 1242.3
1943 Male, age 61, both hemispheres 1609.8
1962 Male, age 76, both hemispheres 1322.8
2851 Male, age 80, both hemispheres 1206.1
2138 Female, age 91, both hemispheres 830.4
Medial parabrachial nucleus
nTPM: 1184.9
2786 Male, age 76, both hemispheres 1359.5
2463 Female, age 85, right hemisphere 1308.5
2156 Male, age 61, both hemispheres 1250.1
2170 Female, age 91, both hemispheres 1066.8
2854 Male, age 80, both hemispheres 939.5
Medial periolivary nuclei
nTPM: 781.1
2081 Male, age 80, both hemispheres 1447.4
2063 Male, age 76, both hemispheres 728.8
2791 Male, age 74, right hemisphere 617.0
2171 Female, age 85, both hemispheres 616.0
2458 Female, age 91, both hemispheres 496.5
Medial vestibular nucleus
nTPM: 914.9
2624 Male, age 61, both hemispheres 1320.3
2134 Male, age 76, both hemispheres 1056.2
2743 Female, age 85, both hemispheres 849.5
2093 Male, age 80, both hemispheres 825.6
2801 Male, age 74, both hemispheres 772.8
2803 Female, age 91, both hemispheres 665.0
Motor facial nucleus
nTPM: 659.9
2126 Male, age 61, both hemispheres 990.1
2062 Male, age 76, both hemispheres 852.9
2365 Male, age 74, right hemisphere 678.9
2697 Female, age 85, both hemispheres 531.0
2795 Female, age 91, both hemispheres 501.0
2327 Male, age 80, both hemispheres 405.2
Motor hypoglossal nucleus
nTPM: 923.8
2277 Male, age 76, both hemispheres 1408.0
2182 Male, age 80, both hemispheres 998.5
2461 Male, age 61, both hemispheres 986.6
2125 Female, age 91, both hemispheres 692.8
2132 Female, age 85, both hemispheres 533.1
Motor trigeminal nucleus
nTPM: 1027.9
2335 Male, age 61, both hemispheres 1683.8
2309 Male, age 76, both hemispheres 1224.5
2079 Male, age 80, both hemispheres 1018.0
2560 Male, age 74, both hemispheres 641.6
2321 Female, age 91, both hemispheres 571.5
Nuclei of the trapezoid body
nTPM: 700.2
1983 Male, age 76, both hemispheres 955.4
2159 Male, age 61, both hemispheres 790.3
2166 Male, age 80, both hemispheres 703.1
2735 Female, age 85, both hemispheres 609.5
2368 Female, age 91, both hemispheres 442.5
Nucleus ambiguus
nTPM: 1394.8
2071 Male, age 76, both hemispheres 1601.3
2096 Female, age 85, both hemispheres 1188.2
Nucleus cuneatus
nTPM: 980.7
2564 Male, age 74, both hemispheres 1194.7
2562 Male, age 61, both hemispheres 1100.5
2808 Female, age 85, both hemispheres 1100.1
2131 Male, age 76, both hemispheres 1075.6
2380 Male, age 80, both hemispheres 1032.9
2100 Male, age 76, both hemispheres 1027.1
2381 Male, age 80, both hemispheres 894.6
2376 Male, age 61, both hemispheres 813.6
2805 Female, age 91, both hemispheres 587.3
Nucleus gracilis
nTPM: 1200.6
2299 Female, age 85, both hemispheres 1421.7
2627 Male, age 74, both hemispheres 1203.2
2382 Male, age 80, both hemispheres 976.8
Nucleus raphe magnus
nTPM: 722.2
2051 Male, age 76, both hemispheres 1545.2
2455 Male, age 74, both hemispheres 732.0
2328 Male, age 80, both hemispheres 586.6
2160 Male, age 61, both hemispheres 582.6
2172 Female, age 85, both hemispheres 471.2
2459 Female, age 91, both hemispheres 415.7
Nucleus raphe obscurus
nTPM: 961.0
2142 Male, age 76, midline 1378.5
2800 Male, age 61, midline 842.7
2845 Female, age 85, midline 661.9
Nucleus raphe pallidus
nTPM: 1446.1
1924 Male, age 61, midline 2237.2
2145 Male, age 76, midline 1199.0
2183 Male, age 80, midline 901.9
Nucleus tractus solitarii
nTPM: 826.8
2656 Male, age 76, both hemispheres 1223.5
2307 Male, age 80, both hemispheres 811.1
2191 Female, age 85, both hemispheres 797.1
2144 Female, age 91, right hemisphere 475.5
Paramedian reticular nucleus
nTPM: 838.2
2313 Male, age 61, both hemispheres 1235.6
2057 Male, age 80, both hemispheres 812.6
2052 Male, age 76, both hemispheres 693.8
2050 Female, age 85, both hemispheres 610.8
Parvicellular reticular nuclei
nTPM: 928.0
2119 Male, age 80, both hemispheres 1191.1
2095 Male, age 76, both hemispheres 905.2
2558 Male, age 74, both hemispheres 687.5
Parvicellular reticular nuclei, medullary
nTPM: 891.1
2091 Female, age 85, both hemispheres 998.0
2181 Male, age 80, left hemisphere 872.0
2189 Female, age 91, both hemispheres 803.4
Pedunculopontine tegmental nucleus
nTPM: 1477.1
2338 Male, age 61, both hemispheres 1898.4
1921 Female, age 85, both hemispheres 1295.5
2334 Male, age 80, both hemispheres 1237.3
Peritrigeminal nucleus
nTPM: 1296.0
2067 Female, age 85, both hemispheres 1446.4
2136 Male, age 76, both hemispheres 1236.2
2179 Male, age 61, both hemispheres 1205.4
Pontine nuclei
nTPM: 799.7
2115 Male, age 80, left hemisphere 1784.7
1968 Male, age 76, left hemisphere 959.5
2787 Female, age 85, both hemispheres 826.1
2319 Female, age 91, both hemispheres 699.7
1863 Male, age 55, unknown 666.2
2727 Male, age 61, right hemisphere 606.2
2109 Female, age 72, unknown 534.1
2454 Male, age 74, left hemisphere 321.5
Pontine raphe nucleus
nTPM: 1160.8
2853 Male, age 76, midline 1550.5
2122 Female, age 85, midline 771.0
Posteroventral cochlear nucleus
nTPM: 983.3
2371 Male, age 61, both hemispheres 1346.1
2070 Male, age 76, both hemispheres 1100.5
2752 Female, age 85, both hemispheres 973.6
2341 Male, age 80, both hemispheres 784.1
2135 Female, age 91, both hemispheres 712.2
Prepositus hypoglossal nucleus
nTPM: 769.4
2086 Male, age 80, both hemispheres 982.0
2855 Female, age 85, right hemisphere 556.8
Principal sensory trigeminal nucleus
nTPM: 822.5
2324 Male, age 76, both hemispheres 1509.3
2008 Male, age 80, left hemisphere 627.1
2367 Female, age 91, left hemisphere 603.3
2158 Male, age 61, both hemispheres 550.2
Reticular pontine nucleus, caudal
nTPM: 671.8
2092 Male, age 76, both hemispheres 834.5
2559 Male, age 74, both hemispheres 692.6
2332 Male, age 80, right hemisphere 667.2
2457 Female, age 91, both hemispheres 493.0
Reticular pontine nucleus, oral
nTPM: 909.6
1939 Male, age 80, both hemispheres 1394.8
2167 Male, age 76, both hemispheres 1370.5
2012 Female, age 85, both hemispheres 899.7
2366 Female, age 91, both hemispheres 470.4
2361 Male, age 74, both hemispheres 412.3
Reticulotegmental nucleus
nTPM: 1013.0
2325 Male, age 76, both hemispheres 1209.0
2333 Male, age 80, both hemispheres 1200.0
2452 Male, age 74, both hemispheres 919.5
2322 Female, age 91, both hemispheres 723.5
Spinal trigeminal nucleus, caudal
nTPM: 1097.4
2642 Male, age 74, both hemispheres 1284.9
2312 Male, age 61, both hemispheres 1253.9
2447 Male, age 76, both hemispheres 1218.2
2308 Male, age 80, both hemispheres 1093.3
2390 Female, age 91, both hemispheres 637.0
Spinal trigeminal nucleus, interpolar
nTPM: 929.7
2625 Male, age 61, both hemispheres 1313.9
2033 Male, age 80, both hemispheres 988.9
2386 Female, age 85, both hemispheres 858.2
2066 Male, age 76, right hemisphere 832.1
2389 Female, age 91, both hemispheres 655.6
Spinal trigeminal nucleus, oral
nTPM: 1005.9
1978 Male, age 76, both hemispheres 1105.4
2737 Female, age 85, both hemispheres 1006.6
2164 Male, age 80, both hemispheres 905.8
Spinal vestibular nucleus
nTPM: 939.0
2796 Male, age 61, both hemispheres 1441.3
2748 Male, age 76, both hemispheres 1086.2
2780 Male, age 80, both hemispheres 991.5
2186 Female, age 91, both hemispheres 834.6
2384 Male, age 74, both hemispheres 661.9
2806 Female, age 85, both hemispheres 618.5
Subcoeruleus area
nTPM: 1103.8
2451 Male, age 74, both hemispheres 1361.2
2323 Female, age 91, left hemisphere 1256.9
2369 Female, age 85, left hemisphere 1129.7
1958 Male, age 80, both hemispheres 1017.2
2089 Male, age 76, left hemisphere 754.1
Superior olive
nTPM: 646.0
2020 Male, age 76, both hemispheres 762.8
2561 Female, age 91, both hemispheres 692.0
2364 Male, age 74, right hemisphere 683.3
2329 Male, age 80, right hemisphere 625.6
1875 Female, age 85, both hemispheres 466.3
Superior vestibular nucleus
nTPM: 969.1
2061 Male, age 76, both hemispheres 1172.0
2015 Male, age 80, both hemispheres 1014.1
2383 Male, age 74, both hemispheres 721.3
Ventral medullary reticular nucleus
nTPM: 1010.5
2060 Male, age 76, both hemispheres 1067.3
2372 Male, age 61, both hemispheres 953.7
Ventral periolivary nuclei
nTPM: 603.6
2023 Male, age 76, both hemispheres 681.8
2165 Male, age 80, both hemispheres 658.3
2794 Female, age 91, left hemisphere 561.6
2130 Female, age 85, both hemispheres 512.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1066.9
1986 Male, age 76, both hemispheres 1227.8
2180 Male, age 61, both hemispheres 1191.1
2118 Male, age 80, both hemispheres 1073.7
2741 Female, age 85, both hemispheres 1000.6
2302 Female, age 91, both hemispheres 841.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 921.8
2359 Male, age 61, both hemispheres 1613.4
2161 Male, age 80, both hemispheres 1160.8
2840 Female, age 85, both hemispheres 923.1
1959 Male, age 76, both hemispheres 717.8
2449 Male, age 74, both hemispheres 654.7
2456 Female, age 91, both hemispheres 460.8

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1267.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1267.1
FF:10165-103B3 76 years, female 1518.2
FF:10182-103D2 60 years, female 1016.0
Medulla oblongata
Scaled Tags Per Million: 756.8
FF:10038-101F2 18-64 years, mixed 1043.4
FF:10155-103A2 76 years, female 659.4
FF:10174-103C3 60 years, female 567.5
Pons
Scaled Tags Per Million: 807.0
FF:10033-101E6 18-54 years, mixed 807.0

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 1606.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1421.4
Samples: 4

Max nTPM: 1671.8
Min nTPM: 1131.0
Sample A Female 1131.0
Sample B Female 1427.6
Sample C Male 1671.8
Sample D Male 1455.0
Pons
nTPM: 1606.0
Samples: 4

Max nTPM: 1832.9
Min nTPM: 1401.6
Sample A Female 1525.6
Sample B Female 1401.6
Sample C Male 1832.9
Sample D Male 1663.8

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 642.2
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 642.2
Samples: 4

Max nTPM: 732.7
Min nTPM: 555.1
Sample A Male 732.7
Sample B Male 559.6
Sample C Female 721.3
Sample D Female 555.1

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 20.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 19.8
67936406 Antisense, RP_040604_02_C10, Mouse strain C57BL/6J (56 days, male) 25.3
79490110 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 14.4
77620395 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 13.0
Pons
Expression energy: 20.1
67936406 Antisense, RP_040604_02_C10, Mouse strain C57BL/6J (56 days, male) 24.5
79490110 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 15.7
77620395 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 13.6

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