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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:69.1 nTPM
HPA Brain:130.0 nTPM
GTEx:69.1 nTPM
FANTOM5:177.4 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.0
Sample id Sample description nTPM
Amygdala
nTPM: 118.6
2695 Female, age 67, right hemisphere 158.6
2814 Male, age 76, right hemisphere 140.4
2514 Male, age 75, right hemisphere 99.8
1987 Female, age 91, left hemisphere 98.9
2517 Female, age 94, left hemisphere 95.3
Basal amygdala
nTPM: 116.4
2609 Male, age 75, right hemisphere 159.6
2827 Female, age 67, right hemisphere 140.0
2685 Female, age 94, left hemisphere 111.8
2110 Male, age 80, left hemisphere 109.3
1955 Male, age 76, both hemispheres 92.9
2243 Female, age 91, right hemisphere 84.9
Central amygdala
nTPM: 123.2
2515 Male, age 75, right hemisphere 165.1
2826 Female, age 94, left hemisphere 133.9
1905 Male, age 76, both hemispheres 127.8
2239 Male, age 80, left hemisphere 96.9
2701 Female, age 91, right hemisphere 92.3
Corticomedial amygdala
nTPM: 93.6
2428 Male, age 75, right hemisphere 139.2
2535 Female, age 67, right hemisphere 107.6
2829 Male, age 80, left hemisphere 99.4
2429 Female, age 94, left hemisphere 87.1
2240 Male, age 76, both hemispheres 70.4
2242 Female, age 91, right hemisphere 58.1
Lateral amygdala
nTPM: 130.0
2830 Female, age 67, right hemisphere 186.0
2516 Male, age 75, right hemisphere 155.7
1883 Male, age 76, both hemispheres 127.5
2255 Female, age 91, right hemisphere 104.5
2534 Female, age 94, left hemisphere 103.7
2256 Male, age 80, left hemisphere 102.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 69.1
Samples: 152

Max nTPM: 129.5
Min nTPM: 20.5
Std nTPM: 16.8
Median nTPM: 66.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 129.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 123.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 112.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 107.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 106.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 103.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 100.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 98.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 97.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 96.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 96.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 96.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 94.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 94.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 90.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 89.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 88.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 87.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 85.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 84.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 83.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 83.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 82.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 82.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 81.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 80.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 80.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 79.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 79.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 78.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 78.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 78.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 77.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 77.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 77.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 77.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 76.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 76.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 76.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 74.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 73.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 73.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 73.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 72.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 72.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 72.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 72.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 71.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 71.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 71.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 69.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 69.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 69.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 68.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 68.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 68.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 68.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 67.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 67.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 67.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 67.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 67.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 67.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 67.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 66.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 66.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 65.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 65.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 65.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 65.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 65.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 65.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 65.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 64.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 64.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 64.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 64.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 63.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 63.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 63.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 62.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 62.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 62.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 62.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 62.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 61.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 61.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 60.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 60.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 60.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 60.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 60.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 60.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 59.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 59.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 59.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 58.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 58.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 58.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 58.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 58.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 58.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 57.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 57.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 57.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 57.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 56.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 56.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 56.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 56.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 56.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 56.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 55.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 55.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 54.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 54.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 53.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 53.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 52.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 52.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 52.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 52.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 52.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 51.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 51.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 51.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 51.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 50.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 50.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 49.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 49.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 46.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 46.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 45.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 44.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 43.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 39.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

177.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 177.4
FF:10151-102I7 76 years, female 177.4

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