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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:81.3 nTPM
HPA Brain:119.9 nTPM
GTEx:81.3 nTPM
FANTOM5:150.2 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 102.2
2565 Male, age 75, midline 123.8
2816 Male, age 47, midline 104.2
2194 Female, age 79, both hemispheres 101.4
1981 Female, age 72, midline 93.5
2048 Male, age 55, midline 88.0
Cervical spinal cord, dorsal horn
nTPM: 84.1
2296 Male, age 66, both hemispheres 120.2
2173 Female, age 72, unknown 104.5
2069 Male, age 47, both hemispheres 83.9
1877 Male, age 55, unknown 79.1
2297 Male, age 75, both hemispheres 61.2
2721 Male, age 90, both hemispheres 55.8
Cervical spinal cord, ventral horn
nTPM: 119.9
2480 Male, age 75, both hemispheres 150.8
2820 Female, age 79, both hemispheres 125.8
2809 Male, age 90, both hemispheres 122.7
2295 Male, age 66, both hemispheres 115.0
2068 Male, age 55, unknown 113.7
2098 Female, age 72, unknown 91.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 81.3
Samples: 159

Max nTPM: 212.0
Min nTPM: 35.4
Std nTPM: 33.7
Median nTPM: 69.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 212.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 180.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 179.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 174.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 170.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 168.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 153.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 153.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 150.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 148.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 148.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 140.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 137.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 136.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 134.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 132.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 129.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 125.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 124.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 120.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 120.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 119.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 118.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 118.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 116.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 113.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 110.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 109.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 108.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 102.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 100.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 99.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 98.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 98.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 96.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 96.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 95.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 94.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 94.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 93.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 92.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 92.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 91.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 91.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 91.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 90.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 90.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 89.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 88.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 88.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 87.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 86.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 86.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 86.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 85.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 84.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 84.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 83.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 83.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 81.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 80.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 78.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 77.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 76.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 75.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 74.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 73.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 73.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 73.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 72.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 71.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 70.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 69.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 68.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 68.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 68.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 67.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 67.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 66.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 66.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 66.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 66.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 66.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 66.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 65.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 65.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 65.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 65.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 64.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 64.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 64.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 62.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 62.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 62.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 61.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 61.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 61.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 60.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 60.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 60.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 60.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 60.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 60.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 59.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 59.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 59.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 59.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 59.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 58.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 58.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 58.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 58.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 57.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 57.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 56.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 56.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 56.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 56.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 55.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 55.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 55.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 55.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 54.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 54.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 53.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 53.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 52.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 51.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 51.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 51.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 51.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 51.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 50.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 49.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 49.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 48.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 48.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 48.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 47.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 46.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 46.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 44.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 43.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 42.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 42.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 42.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 39.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 39.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 36.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 35.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

150.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 150.2
FF:10159-103A6 76 years, female 200.5
FF:10181-103D1 60 years, female 99.8

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