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SLC6A8
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  • SUMMARY

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  • SLC6A8
BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
WHITE MATTER - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:208.3 nTPM
FANTOM5:235.2 Scaled Tags Per Million

WHITE MATTER - Annotated protein expression
Pending normal tissue analysis

WHITE MATTER - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.3
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 191.3
1920 Male, age 76, both hemispheres 191.3
Anterior funiculus (white matter)
nTPM: 112.1
2734 Male, age 80, both hemispheres 142.1
2819 Male, age 47, both hemispheres 105.8
2818 Female, age 79, both hemispheres 103.4
2193 Male, age 75, both hemispheres 97.0
Area striata (white matter)
nTPM: 151.2
2258 Female, age 91, left hemisphere 151.2
Cerebellar white matter
nTPM: 155.5
1837 Male, age 76, left hemisphere 197.8
1931 Female, age 91, left hemisphere 197.6
1864 Male, age 80, left hemisphere 171.7
2773 Female, age 85, right hemisphere 140.6
2105 Male, age 74, right hemisphere 120.0
2174 Male, age 61, right hemisphere 105.2
Corpus callosum, genu (white matter)
nTPM: 175.0
1887 Male, age 76, left hemisphere 272.7
1849 Female, age 91, right hemisphere 252.5
1886 Female, age 67, right hemisphere 186.3
1934 Male, age 61, right hemisphere 148.8
1885 Female, age 94, left hemisphere 100.4
2771 Male, age 75, left hemisphere 89.2
Corpus callosum, splenium (white matter)
nTPM: 155.9
1946 Male, age 76, left hemisphere 234.1
2847 Female, age 67, right hemisphere 151.4
2104 Male, age 75, left hemisphere 121.6
2238 Female, age 94, right hemisphere 116.5
Dorsal funiculus (white matter)
nTPM: 116.4
2810 Male, age 90, both hemispheres 133.6
2064 Female, age 79, both hemispheres 115.4
2817 Male, age 47, both hemispheres 114.5
2812 Male, age 66, both hemispheres 110.4
2128 Male, age 75, both hemispheres 108.0
Lateral funiculus (white matter)
nTPM: 97.9
2099 Male, age 90, both hemispheres 117.1
2094 Female, age 79, both hemispheres 111.1
2192 Male, age 75, both hemispheres 93.3
2294 Male, age 66, both hemispheres 70.3
Occipital cortex (white matter)
nTPM: 140.0
2259 Male, age 75, midline 163.4
2257 Female, age 67, both hemispheres 116.6
Parahippocampal cortex (white matter)
nTPM: 153.3
2157 Female, age 91, both hemispheres 153.3
Parieto-temporal junction (white matter)
nTPM: 203.0
2121 Male, age 76, left hemisphere 324.2
2770 Female, age 91, right hemisphere 251.1
2774 Male, age 61, right hemisphere 188.4
1999 Female, age 67, right hemisphere 166.1
2469 Male, age 75, right hemisphere 144.9
1935 Female, age 94, right hemisphere 143.3
Somatomor cortex, precentral gyrus (white matter)
nTPM: 103.7
2439 Male, age 75, right hemisphere 103.7
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 108.0
2623 Male, age 75, right hemisphere 108.0
Temporal white matter
nTPM: 208.3
2736 Female, age 91, right hemisphere 279.9
1801 Male, age 76, left hemisphere 273.3
2524 Female, age 85, left hemisphere 193.3
2254 Male, age 75, right hemisphere 152.7
2523 Female, age 94, left hemisphere 142.4

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 235.2
FF:10042-101F6 24-68 years, mixed 235.2

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