We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLC6A8
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SLC6A8
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:151.2 nTPM
FANTOM5:255.9 Scaled Tags Per Million

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 111.4
2032 Female, age 42, unknown 135.4
2497 Male, age 66, unknown 122.0
2396 Male, age 61, right hemisphere 76.9
Centromedial thalamic nucleus
nTPM: 150.2
2279 Female, age 85, left hemisphere 174.7
2401 Male, age 76, right hemisphere 125.6
Habenula
nTPM: 86.8
2252 Male, age 62, unknown 94.5
2203 Male, age 61, left hemisphere 86.4
2276 Male, age 66, unknown 86.1
1957 Male, age 80, both hemispheres 80.1
Lateral geniculate body
nTPM: 132.8
2035 Female, age 72, unknown 157.9
2841 Male, age 80, both hemispheres 153.9
2857 Male, age 74, right hemisphere 150.2
2659 Male, age 66, unknown 148.8
2399 Male, age 61, left hemisphere 117.3
2106 Female, age 67, right hemisphere 116.1
2575 Female, age 94, right hemisphere 110.7
1953 Male, age 62, unknown 107.2
Lateral thalamic nuclei
nTPM: 139.1
2577 Male, age 74, both hemispheres 218.7
2661 Female, age 72, unknown 150.2
2573 Female, age 94, left hemisphere 122.1
2765 Female, age 67, both hemispheres 119.0
1903 Male, age 76, left hemisphere 85.6
Medial dorsal thalamic nucleus
nTPM: 116.3
2576 Male, age 74, both hemispheres 171.2
2660 Female, age 72, unknown 144.7
2492 Male, age 75, right hemisphere 144.6
2402 Female, age 67, both hemispheres 125.8
1859 Male, age 76, both hemispheres 116.0
1810 Male, age 48, unknown 114.2
2026 Male, age 62, unknown 105.3
2283 Male, age 80, right hemisphere 104.5
1930 Female, age 42, unknown 104.4
2572 Female, age 94, right hemisphere 102.2
2039 Female, age 72, unknown 100.3
2498 Male, age 66, unknown 91.4
1971 Male, age 61, right hemisphere 87.5
Medial geniculate body
nTPM: 125.3
2571 Male, age 75, right hemisphere 204.5
2657 Male, age 74, right hemisphere 127.0
2217 Female, age 72, unknown 119.9
2207 Male, age 80, right hemisphere 115.8
2650 Female, age 94, left hemisphere 111.2
1811 Female, age 42, unknown 108.7
2049 Male, age 76, both hemispheres 89.8
Nucleus reuniens
nTPM: 137.4
2210 Female, age 85, left hemisphere 230.8
2205 Male, age 80, left hemisphere 117.6
2212 Female, age 67, left hemisphere 63.9
Nucleus rhomboideus
nTPM: 132.5
2280 Female, age 85, left hemisphere 233.8
2206 Male, age 80, both hemispheres 88.9
2213 Female, age 67, left hemisphere 74.8
Posterior thalamic nucleus
nTPM: 130.1
2655 Male, age 74, right hemisphere 166.0
2266 Male, age 76, right hemisphere 137.9
2495 Female, age 67, right hemisphere 109.6
2649 Female, age 94, both hemispheres 107.1
Pulvinar
nTPM: 122.6
2582 Female, age 72, unknown 135.4
2499 Male, age 66, unknown 130.4
1899 Female, age 42, unknown 128.8
2496 Female, age 67, right hemisphere 125.5
2724 Male, age 74, right hemisphere 125.1
1932 Male, age 80, right hemisphere 123.0
1929 Male, age 48, unknown 119.9
2398 Male, age 61, left hemisphere 117.4
1972 Male, age 62, unknown 111.4
2214 Male, age 76, right hemisphere 108.9
Subthalamic nucleus
nTPM: 118.9
2056 Female, age 72, unknown 168.0
2658 Male, age 74, both hemispheres 153.3
2124 Male, age 62, unknown 132.3
2275 Male, age 66, unknown 122.6
2216 Male, age 48, unknown 112.7
2282 Male, age 61, both hemispheres 111.7
2779 Female, age 42, unknown 90.4
2406 Female, age 72, unknown 60.5
Ventral posterolateral thalamic nucleus
nTPM: 151.2
2578 Male, age 74, both hemispheres 202.0
2581 Female, age 72, unknown 180.5
2570 Male, age 75, right hemisphere 164.7
2740 Male, age 76, right hemisphere 150.2
2197 Male, age 80, both hemispheres 107.3
2397 Male, age 61, right hemisphere 102.5
Ventral posteromedial thalamic nucleus
nTPM: 143.5
2653 Male, age 74, both hemispheres 215.1
2281 Male, age 75, right hemisphere 166.7
2127 Male, age 76, right hemisphere 131.7
2758 Male, age 80, both hemispheres 112.3
2202 Male, age 61, left hemisphere 91.6
Ventral thalamic nuclei
nTPM: 138.5
2652 Male, age 74, left hemisphere 186.0
2580 Male, age 66, unknown 163.0
2858 Female, age 72, unknown 152.8
1845 Male, age 48, unknown 141.1
1860 Male, age 76, both hemispheres 136.9
2291 Female, age 72, unknown 131.9
2204 Male, age 80, both hemispheres 119.7
2285 Male, age 62, unknown 109.0
1912 Female, age 42, unknown 106.3
Zona incerta
nTPM: 127.5
2215 Male, age 66, unknown 143.9
2822 Male, age 74, right hemisphere 140.8
2663 Female, age 72, unknown 134.9
2403 Male, age 62, unknown 117.9
2208 Male, age 80, right hemisphere 99.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

255.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 255.9
FF:10154-103A1 76 years, female 255.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org