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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7714.7
Sample id
Sample description
nTPM
Amygdala nTPM: 7714.7
2695
Female, age 67, right hemisphere
14823.8
1987
Female, age 91, left hemisphere
8845.7
2814
Male, age 76, right hemisphere
7036.9
2517
Female, age 94, left hemisphere
4027.6
2514
Male, age 75, right hemisphere
3839.6
Basal amygdala nTPM: 4727.4
1955
Male, age 76, both hemispheres
6412.9
2609
Male, age 75, right hemisphere
4983.7
2110
Male, age 80, left hemisphere
4948.8
2243
Female, age 91, right hemisphere
4539.7
2827
Female, age 67, right hemisphere
4097.4
2685
Female, age 94, left hemisphere
3382.0
Central amygdala nTPM: 6503.5
2515
Male, age 75, right hemisphere
8699.1
1905
Male, age 76, both hemispheres
7433.7
2826
Female, age 94, left hemisphere
6348.4
2701
Female, age 91, right hemisphere
5254.7
2239
Male, age 80, left hemisphere
4781.5
Corticomedial amygdala nTPM: 4529.0
2242
Female, age 91, right hemisphere
5688.9
2428
Male, age 75, right hemisphere
5379.8
2240
Male, age 76, both hemispheres
5100.2
2829
Male, age 80, left hemisphere
4807.4
2535
Female, age 67, right hemisphere
3751.1
2429
Female, age 94, left hemisphere
2446.8
Lateral amygdala nTPM: 5654.7
1883
Male, age 76, both hemispheres
7162.7
2256
Male, age 80, left hemisphere
7048.4
2830
Female, age 67, right hemisphere
6476.5
2516
Male, age 75, right hemisphere
5322.3
2255
Female, age 91, right hemisphere
4613.8
2534
Female, age 94, left hemisphere
3304.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3366.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 3366.2
Samples: 152
Max nTPM: 18075.2
Min nTPM: 68.5
Std nTPM: 2319.7
Median nTPM: 2858.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
18075.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
12113.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
9818.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
9714.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
8227.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
8221.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
8171.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
7271.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
7221.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
7160.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
6731.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
6246.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
6223.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
6148.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
5910.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
5867.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
5763.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
5628.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
5556.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
5456.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
5360.0
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
5173.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
5120.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
5112.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
5107.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
5043.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
4915.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
4851.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
4719.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
4701.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
4671.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
4661.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
4547.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
4537.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
4502.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
4493.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
4468.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
4400.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
4351.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
4214.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
4209.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
4161.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
4119.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
4050.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
3963.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
3957.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
3868.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
3841.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
3793.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
3679.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
3644.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
3626.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
3483.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
3462.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
3377.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
3377.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
3362.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
3337.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
3326.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
3277.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
3276.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
3272.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
3252.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
3210.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
3197.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
3195.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
3189.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
3178.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
3132.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
3120.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
3105.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
3082.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
3061.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
3036.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
2916.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2882.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
2834.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
2820.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
2809.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
2797.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
2790.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
2730.1
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
2715.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
2693.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
2654.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
2630.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
2580.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
2556.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
2522.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
2510.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
2509.1
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
2480.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
2334.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
2314.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
2270.4
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
2242.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
2201.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
2188.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
2187.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
2164.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
2149.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
2130.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
2017.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
2009.0
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
1993.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
1984.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1972.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1970.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
1961.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1938.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
1923.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1885.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
1872.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
1849.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
1828.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1826.9
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
1805.9
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
1799.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
1730.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1674.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
1603.3
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
1585.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1570.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
1517.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1484.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
1466.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1460.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
1450.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
1422.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
1370.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
1328.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1319.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
1278.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
1259.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
1253.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1228.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1226.1
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
1200.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
1188.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1182.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1132.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1119.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1111.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
1085.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1078.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
1076.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
1065.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1048.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
1006.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
907.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
188.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
68.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
141.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 141.6
Samples: 4
Max nTPM: 165.2
Min nTPM: 119.5
Sample A
Male
145.4
Sample B
Male
136.4
Sample C
Female
119.5
Sample D
Female
165.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
