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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10023.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 7310.2
2090
Male, age 80, both hemispheres
9564.5
2301
Female, age 85, both hemispheres
8972.2
1984
Male, age 76, both hemispheres
6455.1
2188
Female, age 91, both hemispheres
4249.0
Dorsal cochlear nucleus nTPM: 10023.8
2058
Male, age 76, both hemispheres
12712.1
2802
Male, age 74, right hemisphere
11829.9
2378
Male, age 80, both hemispheres
10709.4
2370
Male, age 61, both hemispheres
8423.1
2187
Female, age 91, both hemispheres
6444.4
Dorsal tegmental nucleus nTPM: 7894.4
1936
Male, age 76, left hemisphere
8480.2
2326
Male, age 74, both hemispheres
8338.4
2358
Male, age 61, both hemispheres
7988.1
2083
Male, age 80, both hemispheres
6770.9
Dorsolateral tegmental area nTPM: 6694.9
2360
Male, age 74, both hemispheres
8616.3
2141
Male, age 76, both hemispheres
7079.9
2654
Male, age 80, both hemispheres
7053.8
2337
Male, age 61, both hemispheres
5892.8
2751
Female, age 85, both hemispheres
4831.6
Kolliker-Fuse nucleus nTPM: 8594.9
2315
Male, age 76, right hemisphere
16724.0
2163
Male, age 80, both hemispheres
5441.4
2793
Female, age 91, left hemisphere
3619.1
Lateral lemniscal nuclei nTPM: 3701.0
2746
Female, age 85, left hemisphere
5957.4
2169
Male, age 76, both hemispheres
4177.2
2453
Male, age 74, right hemisphere
4086.8
2036
Male, age 80, both hemispheres
2312.3
2320
Female, age 91, left hemisphere
1971.4
Lateral parabrachial nucleus nTPM: 8978.7
2139
Female, age 85, right hemisphere
10636.2
2792
Male, age 76, both hemispheres
10264.3
2013
Male, age 80, both hemispheres
8492.2
2790
Male, age 61, both hemispheres
6522.3
Lateral vestibular nucleus nTPM: 8108.4
2311
Male, age 80, both hemispheres
9540.0
2184
Male, age 76, both hemispheres
6676.7
Locus coeruleus nTPM: 6012.8
2317
Female, age 72, unknown
7502.5
1980
Male, age 76, both hemispheres
7219.4
2123
Female, age 91, both hemispheres
6615.2
2788
Male, age 74, unknown
5974.4
2162
Male, age 80, both hemispheres
5525.5
2014
Male, age 55, unknown
4823.6
2720
Male, age 74, both hemispheres
4429.2
Medial parabrachial nucleus nTPM: 5725.6
2786
Male, age 76, both hemispheres
6462.9
2156
Male, age 61, both hemispheres
5976.3
2854
Male, age 80, both hemispheres
5646.3
2463
Female, age 85, right hemisphere
5470.7
2170
Female, age 91, both hemispheres
5071.9
Medial periolivary nuclei nTPM: 5625.1
2791
Male, age 74, right hemisphere
7849.2
2063
Male, age 76, both hemispheres
6367.0
2081
Male, age 80, both hemispheres
6127.2
2171
Female, age 85, both hemispheres
4117.5
2458
Female, age 91, both hemispheres
3664.5
Motor facial nucleus nTPM: 5810.0
2126
Male, age 61, both hemispheres
7363.9
2365
Male, age 74, right hemisphere
6576.0
2062
Male, age 76, both hemispheres
6552.6
2795
Female, age 91, both hemispheres
6213.7
2697
Female, age 85, both hemispheres
5022.0
2327
Male, age 80, both hemispheres
3131.7
Motor trigeminal nucleus nTPM: 5021.2
2309
Male, age 76, both hemispheres
6537.6
2335
Male, age 61, both hemispheres
6478.6
2560
Male, age 74, both hemispheres
4801.5
2079
Male, age 80, both hemispheres
3668.3
2321
Female, age 91, both hemispheres
3620.2
Nuclei of the trapezoid body nTPM: 5049.3
1983
Male, age 76, both hemispheres
7076.7
2166
Male, age 80, both hemispheres
5652.4
2735
Female, age 85, both hemispheres
4789.7
2368
Female, age 91, both hemispheres
4700.2
2159
Male, age 61, both hemispheres
3027.4
Nucleus raphe magnus nTPM: 4397.8
2051
Male, age 76, both hemispheres
7795.9
2455
Male, age 74, both hemispheres
5855.4
2328
Male, age 80, both hemispheres
4509.5
2160
Male, age 61, both hemispheres
3016.1
2172
Female, age 85, both hemispheres
2702.5
2459
Female, age 91, both hemispheres
2507.6
Paramedian reticular nucleus nTPM: 6627.7
2057
Male, age 80, both hemispheres
8126.1
2052
Male, age 76, both hemispheres
7339.4
2313
Male, age 61, both hemispheres
5836.9
2050
Female, age 85, both hemispheres
5208.3
Pedunculopontine tegmental nucleus nTPM: 6186.4
2334
Male, age 80, both hemispheres
6447.1
1921
Female, age 85, both hemispheres
6209.7
2338
Male, age 61, both hemispheres
5902.3
Pontine nuclei nTPM: 4116.7
2109
Female, age 72, unknown
7480.2
1863
Male, age 55, unknown
5495.8
2115
Male, age 80, left hemisphere
5486.7
1968
Male, age 76, left hemisphere
4852.5
2319
Female, age 91, both hemispheres
2856.6
2787
Female, age 85, both hemispheres
2736.3
2454
Male, age 74, left hemisphere
2327.0
2727
Male, age 61, right hemisphere
1698.9
Pontine raphe nucleus nTPM: 5560.0
2853
Male, age 76, midline
6852.3
2122
Female, age 85, midline
4267.7
Posteroventral cochlear nucleus nTPM: 6660.3
2371
Male, age 61, both hemispheres
9198.9
2070
Male, age 76, both hemispheres
7571.0
2341
Male, age 80, both hemispheres
6448.8
2752
Female, age 85, both hemispheres
6119.4
2135
Female, age 91, both hemispheres
3963.5
Principal sensory trigeminal nucleus nTPM: 4492.2
2324
Male, age 76, both hemispheres
7789.5
2158
Male, age 61, both hemispheres
4150.8
2008
Male, age 80, left hemisphere
3523.9
2367
Female, age 91, left hemisphere
2504.6
Reticular pontine nucleus, caudal nTPM: 4309.3
2092
Male, age 76, both hemispheres
6819.8
2559
Male, age 74, both hemispheres
4828.0
2457
Female, age 91, both hemispheres
3224.8
2332
Male, age 80, right hemisphere
2364.5
Reticular pontine nucleus, oral nTPM: 4315.6
2167
Male, age 76, both hemispheres
6375.2
1939
Male, age 80, both hemispheres
5453.8
2012
Female, age 85, both hemispheres
4255.6
2361
Male, age 74, both hemispheres
2868.0
2366
Female, age 91, both hemispheres
2625.7
Reticulotegmental nucleus nTPM: 5285.9
2452
Male, age 74, both hemispheres
5729.9
2325
Male, age 76, both hemispheres
5492.7
2333
Male, age 80, both hemispheres
5207.8
2322
Female, age 91, both hemispheres
4713.0
Spinal trigeminal nucleus, oral nTPM: 5941.3
1978
Male, age 76, both hemispheres
6845.1
2737
Female, age 85, both hemispheres
5713.3
2164
Male, age 80, both hemispheres
5265.4
Subcoeruleus area nTPM: 5218.2
2451
Male, age 74, both hemispheres
7094.4
1958
Male, age 80, both hemispheres
4968.7
2369
Female, age 85, left hemisphere
4870.3
2323
Female, age 91, left hemisphere
4703.5
2089
Male, age 76, left hemisphere
4454.3
Superior olive nTPM: 4828.1
2364
Male, age 74, right hemisphere
7400.3
2020
Male, age 76, both hemispheres
5417.2
2329
Male, age 80, right hemisphere
4189.6
1875
Female, age 85, both hemispheres
3650.8
2561
Female, age 91, both hemispheres
3482.5
Ventral periolivary nuclei nTPM: 4897.7
2130
Female, age 85, both hemispheres
6634.8
2165
Male, age 80, both hemispheres
5088.7
2023
Male, age 76, both hemispheres
4921.2
2794
Female, age 91, left hemisphere
2946.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 5967.1
2359
Male, age 61, both hemispheres
7800.3
2840
Female, age 85, both hemispheres
6375.5
1959
Male, age 76, both hemispheres
6030.5
2161
Male, age 80, both hemispheres
5939.2
2449
Male, age 74, both hemispheres
5169.5
2456
Female, age 91, both hemispheres
4487.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4528.6
Pig sample
Sample description
nTPM
Pons nTPM: 4528.6
Samples: 4
Max nTPM: 5503.4
Min nTPM: 4095.7
Sample A
Female
4376.6
Sample B
Female
4095.7
Sample C
Male
4138.8
Sample D
Male
5503.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
