MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7466.5 nTPM
HPA Brain:16300.7 nTPM
GTEx:7466.5 nTPM
FANTOM5:5108.1 Scaled Tags Per Million
Pig:6691.7 nTPM
Mouse:243.7 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16300.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7916.9
2828 Female, age 72, unknown 14487.4
2666 Male, age 74, left hemisphere 10836.5
2586 Male, age 75, left hemisphere 9493.7
1870 Female, age 42, unknown 9074.5
1827 Male, age 72, unknown 8934.8
2411 Female, age 72, unknown 7512.5
1833 Male, age 53, unknown 6244.8
1830 Male, age 51, unknown 5728.4
2219 Male, age 76, both hemispheres 3740.6
2019 Male, age 18, unknown 3115.2
Dorsal raphe nucleus
nTPM: 12127.0
2016 Female, age 72, unknown 18299.6
2298 Female, age 72, unknown 12752.5
2047 Male, age 72, unknown 12290.6
1828 Male, age 53, unknown 11843.9
2750 Male, age 76, both hemispheres 5448.5
Inferior colliculus
nTPM: 9642.2
2849 Male, age 72, unknown 11122.2
2097 Female, age 72, unknown 10022.9
1848 Female, age 42, unknown 9838.2
1890 Male, age 53, unknown 7585.6
Median raphe nucleus
nTPM: 6760.7
2220 Male, age 76, midline 6760.7
Periaquaductal grey, anterior
nTPM: 10003.2
1795 Male, age 51, unknown 13195.1
2502 Female, age 75, unknown 9613.4
1947 Male, age 18, unknown 7201.0
Periaquaductal grey, dorsal
nTPM: 13838.3
1840 Male, age 53, unknown 16070.3
2850 Male, age 76, both hemispheres 14914.4
1831 Male, age 72, unknown 13189.5
2464 Female, age 72, unknown 11178.9
Periaquaductal grey, lateral
nTPM: 16300.7
2053 Male, age 18, unknown 25346.5
2140 Male, age 76, both hemispheres 14542.4
2272 Male, age 74, both hemispheres 9013.2
Pretectal area
nTPM: 7974.5
2825 Male, age 18, unknown 14188.3
2273 Male, age 74, both hemispheres 11560.7
2224 Female, age 72, unknown 9780.7
2316 Male, age 76, right hemisphere 9298.4
2407 Male, age 75, both hemispheres 8399.9
1944 Female, age 72, unknown 7832.7
2667 Female, age 75, unknown 6662.5
1815 Male, age 53, unknown 6511.3
1816 Male, age 51, unknown 5274.6
1817 Female, age 42, unknown 4445.8
2007 Male, age 72, unknown 3765.1
Red nucleus
nTPM: 6259.6
2503 Female, age 72, unknown 10487.4
2725 Female, age 75, unknown 7489.2
2769 Male, age 72, unknown 7360.9
2227 Male, age 72, unknown 6918.6
2823 Male, age 76, right hemisphere 6051.1
1821 Female, age 72, unknown 5948.5
2584 Male, age 75, left hemisphere 5629.9
2588 Male, age 74, left hemisphere 5514.4
1865 Male, age 51, unknown 5474.2
1954 Female, age 42, unknown 5401.4
1904 Male, age 53, unknown 5147.6
2785 Male, age 18, unknown 3692.3
Substantia nigra
nTPM: 7137.2
2699 Male, age 18, unknown 13354.8
1851 Male, age 51, unknown 7893.6
2590 Female, age 75, unknown 7631.4
2583 Male, age 75, right hemisphere 6906.4
1941 Male, age 53, unknown 6680.4
2665 Male, age 74, both hemispheres 6521.7
1916 Female, age 42, unknown 6273.4
1889 Female, age 72, unknown 5853.4
2409 Female, age 72, unknown 5846.9
2241 Male, age 72, unknown 4410.6
Superior colliculus
nTPM: 9737.5
1995 Male, age 72, unknown 13782.9
1913 Female, age 42, unknown 13035.4
2664 Male, age 75, both hemispheres 11647.2
1796 Male, age 53, unknown 11121.2
2587 Male, age 74, left hemisphere 9748.0
1839 Male, age 51, unknown 9175.6
2087 Female, age 72, unknown 8469.1
2668 Female, age 75, unknown 7679.2
2261 Male, age 18, unknown 7598.9
1895 Male, age 76, right hemisphere 5118.0
Ventral tegmental area
nTPM: 9932.8
2021 Male, age 53, unknown 13143.9
1915 Female, age 42, unknown 12584.0
1942 Male, age 51, unknown 12230.3
2223 Female, age 72, unknown 7606.4
2410 Female, age 72, unknown 7426.8
2218 Male, age 76, both hemispheres 6605.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7466.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7466.5
Samples: 139

Max nTPM: 24349.4
Min nTPM: 1586.3
Std nTPM: 4100.1
Median nTPM: 6713.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 24349.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 19596.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 19021.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18916.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 18492.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 15726.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 14961.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 14423.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 14385.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 13830.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 13825.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5108.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5108.1
FF:10158-103A5 76 years, female 5108.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6691.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6008.9
Samples: 4

Max nTPM: 6363.8
Min nTPM: 5659.0
Sample A Female 6363.8
Sample B Female 5659.0
Sample C Male 6013.5
Sample D Male 5999.1
Midbrain
nTPM: 6691.7
Samples: 4

Max nTPM: 15487.7
Min nTPM: 2336.7
Sample A Female 15487.7
Sample B Female 5116.1
Sample C Male 3826.3
Sample D Male 2336.7
Periaqueductal gray
nTPM: 6289.9
Samples: 3

Max nTPM: 7743.1
Min nTPM: 5550.9
Sample B Female 5550.9
Sample C Male 7743.1
Sample D Male 5575.8
Superior colliculi
nTPM: 3466.1
Samples: 4

Max nTPM: 4175.9
Min nTPM: 2032.6
Sample A Female 3533.8
Sample B Female 2032.6
Sample C Male 4122.1
Sample D Male 4175.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 243.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 243.7
Samples: 4

Max nTPM: 269.4
Min nTPM: 221.0
Sample A Male 269.4
Sample B Male 227.5
Sample C Female 221.0
Sample D Female 256.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
1358 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 2.8
79591671 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.7
1357 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 2.6
79913385 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.0

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