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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1365.1 nTPM
HPA Brain:261.2 nTPM
GTEx:1365.1 nTPM
FANTOM5:39.8 Scaled Tags Per Million
Pig:311.9 nTPM
Mouse:384.6 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.2
Sample id Sample description nTPM
Amygdala
nTPM: 261.2
2695 Female, age 67, right hemisphere 307.3
2514 Male, age 75, right hemisphere 294.5
2517 Female, age 94, left hemisphere 247.1
2814 Male, age 76, right hemisphere 229.0
1987 Female, age 91, left hemisphere 228.3
Basal amygdala
nTPM: 211.9
2827 Female, age 67, right hemisphere 256.7
2609 Male, age 75, right hemisphere 248.6
2110 Male, age 80, left hemisphere 207.9
2685 Female, age 94, left hemisphere 200.2
2243 Female, age 91, right hemisphere 184.3
1955 Male, age 76, both hemispheres 173.9
Central amygdala
nTPM: 239.5
2826 Female, age 94, left hemisphere 344.0
2515 Male, age 75, right hemisphere 245.4
2239 Male, age 80, left hemisphere 213.5
2701 Female, age 91, right hemisphere 199.7
1905 Male, age 76, both hemispheres 195.1
Corticomedial amygdala
nTPM: 214.4
2428 Male, age 75, right hemisphere 227.3
2240 Male, age 76, both hemispheres 218.6
2429 Female, age 94, left hemisphere 215.1
2242 Female, age 91, right hemisphere 210.8
2829 Male, age 80, left hemisphere 208.2
2535 Female, age 67, right hemisphere 206.2
Lateral amygdala
nTPM: 231.9
2516 Male, age 75, right hemisphere 294.8
2830 Female, age 67, right hemisphere 290.2
2534 Female, age 94, left hemisphere 272.1
2256 Male, age 80, left hemisphere 192.1
1883 Male, age 76, both hemispheres 176.6
2255 Female, age 91, right hemisphere 165.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1365.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1365.1
Samples: 152

Max nTPM: 4612.0
Min nTPM: 714.6
Std nTPM: 569.8
Median nTPM: 1242.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4612.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3896.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3127.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3106.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2890.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2707.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2551.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2537.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2426.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2134.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2129.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2104.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2103.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2086.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2079.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2067.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1938.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1936.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1914.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1903.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1827.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1779.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1765.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1763.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1755.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1717.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1709.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1699.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1677.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1631.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1570.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1560.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1525.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1520.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1502.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1497.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1468.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1465.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1464.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1462.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1459.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1459.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1449.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1435.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1429.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1417.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1417.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1415.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1401.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1388.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1384.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1383.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1380.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1377.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1370.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1366.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1361.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1349.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1348.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1347.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1334.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1323.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1320.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1316.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1291.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1287.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1285.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1282.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1282.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1281.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1280.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1279.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1260.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1253.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1250.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1243.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1241.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1235.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1233.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1227.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1224.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1218.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1196.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1189.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1184.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1174.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1163.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1153.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1146.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1144.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1142.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1140.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1135.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1128.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1123.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1115.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1111.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1111.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1111.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1108.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1101.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1095.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1094.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1085.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1082.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1082.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1054.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1049.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1048.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1044.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1038.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1035.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1022.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1021.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1020.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1018.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1017.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1001.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 997.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 985.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 979.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 971.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 964.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 964.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 954.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 940.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 931.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 926.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 919.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 911.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 900.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 900.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 900.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 899.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 881.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 869.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 860.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 849.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 834.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 826.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 814.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 812.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 808.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 799.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 797.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 782.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 779.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 764.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 761.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 746.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 733.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 714.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 39.8
FF:10151-102I7 76 years, female 39.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.9
Pig sample Sample description nTPM
Amygdala
nTPM: 312.0
Samples: 4

Max nTPM: 463.5
Min nTPM: 185.3
Sample A Female 463.5
Sample B Female 329.0
Sample C Male 270.1
Sample D Male 185.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

384.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 384.6
Samples: 4

Max nTPM: 410.2
Min nTPM: 361.1
Sample A Male 361.1
Sample B Male 399.3
Sample C Female 410.2
Sample D Female 367.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
69261404 Antisense, RP_050118_01_D07, Mouse strain C57BL/6J (56 days, male) 0.0

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