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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1010.8 nTPM
HPA Brain:292.6 nTPM
GTEx:1010.8 nTPM
FANTOM5:55.2 Scaled Tags Per Million
Pig:485.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 238.5
1981 Female, age 72, midline 286.4
2565 Male, age 75, midline 277.1
2048 Male, age 55, midline 243.2
2194 Female, age 79, both hemispheres 210.4
2816 Male, age 47, midline 175.4
Cervical spinal cord, dorsal horn
nTPM: 268.2
2069 Male, age 47, both hemispheres 370.0
2173 Female, age 72, unknown 305.5
2296 Male, age 66, both hemispheres 268.7
1877 Male, age 55, unknown 256.5
2721 Male, age 90, both hemispheres 211.1
2297 Male, age 75, both hemispheres 197.4
Cervical spinal cord, ventral horn
nTPM: 292.6
2098 Female, age 72, unknown 401.3
2809 Male, age 90, both hemispheres 363.0
2480 Male, age 75, both hemispheres 340.5
2295 Male, age 66, both hemispheres 254.6
2068 Male, age 55, unknown 252.4
2820 Female, age 79, both hemispheres 143.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1010.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1010.8
Samples: 159

Max nTPM: 1928.2
Min nTPM: 397.0
Std nTPM: 295.6
Median nTPM: 963.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1928.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1783.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1760.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1736.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1691.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1630.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1629.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1623.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1597.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1575.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1544.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1532.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1508.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1504.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1500.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1492.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1478.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1438.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1399.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1382.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1373.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1351.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1328.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1290.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1288.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1281.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1275.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1252.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1243.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1227.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1216.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1211.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1199.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1197.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1195.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1194.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1183.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1183.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1183.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1174.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1170.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1167.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1161.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1157.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1155.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1151.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1143.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1127.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1118.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1118.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1106.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1105.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1105.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1099.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1086.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1081.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1079.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1072.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1071.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1063.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1056.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1056.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1050.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1050.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1048.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1048.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1043.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1039.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1035.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1020.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1018.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1011.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 995.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 995.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 993.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 989.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 984.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 974.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 967.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 963.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 962.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 960.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 948.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 944.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 942.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 940.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 935.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 932.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 932.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 925.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 923.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 912.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 904.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 903.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 898.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 896.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 895.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 894.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 893.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 888.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 864.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 860.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 857.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 855.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 847.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 846.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 843.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 843.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 842.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 841.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 832.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 831.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 822.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 817.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 816.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 815.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 794.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 791.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 790.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 790.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 785.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 783.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 781.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 781.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 763.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 754.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 747.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 745.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 741.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 736.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 736.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 735.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 734.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 728.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 726.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 723.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 721.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 713.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 713.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 713.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 696.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 691.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 687.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 687.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 669.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 658.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 644.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 643.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 642.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 634.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 627.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 595.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 578.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 570.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 556.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 533.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 512.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 510.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 397.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 55.2
FF:10181-103D1 60 years, female 69.8
FF:10159-103A6 76 years, female 40.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

485.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 485.6
Samples: 4

Max nTPM: 594.1
Min nTPM: 328.1
Sample A Female 492.0
Sample B Female 528.0
Sample C Male 594.1
Sample D Male 328.1
Ventral spinal cord
nTPM: 462.2
Samples: 4

Max nTPM: 510.3
Min nTPM: 367.8
Sample A Female 496.8
Sample B Female 510.3
Sample C Male 474.0
Sample D Male 367.8

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