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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:382.3 nTPM
GTEx:382.3 nTPM
FANTOM5:56.2 Scaled Tags Per Million
Pig:136.1 nTPM
Mouse:579.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 382.3
Samples: 105

Max nTPM: 522.0
Min nTPM: 221.4
Std nTPM: 68.4
Median nTPM:
452_1 88 years, female 522.0
237_1 82 years, male 515.7
218_1 71 years, female 500.7
384_1 83 years, male 499.3
389_1 86 years, female 495.2
386_1 76 years, male 486.8
320_1 89 years, female 483.6
322_1 76 years, male 479.8
246_1 77 years, male 479.5
321_1 62 years, female 476.6
319_1 81 years, male 474.0
379_1 60 years, male 473.6
377_1 82 years, female 473.3
189_1 76 years, male 467.3
447_1 81 years, male 462.8
526_1 61 years, male 456.8
355_1 70 years, female 453.0
394_1 75 years, female 451.3
137_1 83 years, male 450.2
35_1 74 years, female 446.0
405_1 91 years, male 436.3
375_1 74 years, female 435.2
243_1 75 years, male 431.8
354_1 81 years, female 429.8
376_1 75 years, female 426.2
153_1 70 years, female 425.8
406_1 79 years, male 424.7
251_1 78 years, male 424.0
163_1 78 years, male 422.9
404_1 82 years, female 418.0
351_1 91 years, male 416.4
177_1 74 years, male 415.7
396_1 62 years, male 414.2
17_1 71 years, male 411.2
41_1 94 years, female 410.6
265_1 87 years, male 408.3
4_1 88 years, female 408.0
6_1 73 years, female 407.5
173_1 67 years, male 406.7
347_1 72 years, male 405.4
172_1 72 years, female 404.9
349_1 83 years, male 404.9
353_1 82 years, female 404.3
335_1 73 years, female 403.2
352_1 62 years, male 401.9
145_1 84 years, male 398.2
425_1 59 years, female 396.6
229_1 69 years, female 396.5
2_1 77 years, female 393.0
264_1 73 years, female 389.8
120_1 70 years, female 388.8
316_1 62 years, male 388.4
495_1 57 years, female 385.2
356_1 87 years, female 380.4
503_1 68 years, male 379.9
266_1 85 years, male 379.6
295_1 61 years, female 377.8
350_1 84 years, female 376.7
126_1 63 years, male 376.5
217_1 76 years, male 374.5
506_1 65 years, male 372.8
317_1 60 years, male 370.6
318_1 68 years, male 370.2
254_1 77 years, female 368.8
480_1 63 years, male 368.4
307_1 66 years, female 368.1
518_1 75 years, female 366.4
293_1 68 years, female 365.4
99_1 64 years, male 365.0
311_1 78 years, male 364.4
286_1 68 years, female 363.1
517_1 88 years, male 360.2
348_1 84 years, male 353.3
292_1 71 years, male 351.2
115_1 83 years, male 347.4
42_1 85 years, male 347.3
18_1 88 years, male 345.6
308_1 70 years, female 345.4
499_1 55 years, female 345.3
139_1 64 years, female 343.3
291_1 76 years, male 341.4
109_1 81 years, female 338.9
315_1 62 years, female 337.5
314_1 67 years, male 332.5
468_1 89 years, male 329.3
288_1 66 years, female 328.8
324_1 76 years, male 325.0
142_1 61 years, female 318.1
117_1 61 years, male 316.4
162_1 79 years, female 313.5
501_1 88 years, male 308.6
466_1 57 years, female 298.8
81_1 67 years, male 297.9
9_1 66 years, female 295.7
119_1 70 years, female 285.6
415_1 77 years, female 283.3
414_1 84 years, female 272.2
32_1 67 years, male 260.4
89_1 63 years, male 259.0
313_1 79 years, female 256.2
43_1 64 years, female 233.0
491_1 89 years, female 228.6
149_1 88 years, male 223.9
413_1 59 years, female 222.7
490_1 67 years, female 221.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 56.2
FF:10030-101E3 24-65 years, mixed 56.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.1
Pig sample Sample description nTPM
Retina
nTPM: 136.1
Samples: 4

Max nTPM: 156.3
Min nTPM: 112.1
Sample A Female 156.3
Sample B Female 137.7
Sample C Male 138.4
Sample D Male 112.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

579.7
Mouse sample Sample description nTPM
Retina
nTPM: 579.7
Samples: 4

Max nTPM: 833.0
Min nTPM: 425.5
Sample A Male 582.2
Sample B Male 425.5
Sample C Female 833.0
Sample D Female 478.0

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