MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:165.7 nTPM
HPA Brain:86.6 nTPM
GTEx:165.7 nTPM
FANTOM5:163.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 86.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.6
2019 Male, age 18, unknown 84.8
2666 Male, age 74, left hemisphere 84.2
2586 Male, age 75, left hemisphere 79.5
1827 Male, age 72, unknown 78.5
1870 Female, age 42, unknown 74.8
2411 Female, age 72, unknown 74.8
2828 Female, age 72, unknown 74.5
2219 Male, age 76, both hemispheres 70.0
1833 Male, age 53, unknown 69.6
1830 Male, age 51, unknown 65.0
Dorsal raphe nucleus
nTPM: 76.4
2298 Female, age 72, unknown 82.1
2750 Male, age 76, both hemispheres 80.9
2047 Male, age 72, unknown 78.4
1828 Male, age 53, unknown 77.5
2016 Female, age 72, unknown 63.3
Inferior colliculus
nTPM: 66.3
2097 Female, age 72, unknown 70.2
1890 Male, age 53, unknown 68.2
1848 Female, age 42, unknown 65.2
2849 Male, age 72, unknown 61.5
Median raphe nucleus
nTPM: 79.8
2220 Male, age 76, midline 79.8
Periaquaductal grey, anterior
nTPM: 76.8
1947 Male, age 18, unknown 77.9
2502 Female, age 75, unknown 77.0
1795 Male, age 51, unknown 75.4
Periaquaductal grey, dorsal
nTPM: 65.8
1831 Male, age 72, unknown 67.3
2464 Female, age 72, unknown 67.1
1840 Male, age 53, unknown 64.5
2850 Male, age 76, both hemispheres 64.1
Periaquaductal grey, lateral
nTPM: 63.3
2272 Male, age 74, both hemispheres 68.1
2053 Male, age 18, unknown 61.9
2140 Male, age 76, both hemispheres 59.8
Pretectal area
nTPM: 78.9
1816 Male, age 51, unknown 95.2
1817 Female, age 42, unknown 95.2
2007 Male, age 72, unknown 92.0
1944 Female, age 72, unknown 90.0
1815 Male, age 53, unknown 83.9
2667 Female, age 75, unknown 77.2
2224 Female, age 72, unknown 73.4
2407 Male, age 75, both hemispheres 68.1
2273 Male, age 74, both hemispheres 66.7
2825 Male, age 18, unknown 66.0
2316 Male, age 76, right hemisphere 60.5
Red nucleus
nTPM: 74.7
2785 Male, age 18, unknown 82.9
1821 Female, age 72, unknown 81.0
2725 Female, age 75, unknown 80.0
1954 Female, age 42, unknown 76.9
1865 Male, age 51, unknown 76.0
2769 Male, age 72, unknown 74.1
2227 Male, age 72, unknown 72.5
2584 Male, age 75, left hemisphere 72.5
1904 Male, age 53, unknown 72.4
2503 Female, age 72, unknown 71.5
2823 Male, age 76, right hemisphere 71.4
2588 Male, age 74, left hemisphere 64.8
Substantia nigra
nTPM: 86.6
1916 Female, age 42, unknown 120.3
1851 Male, age 51, unknown 97.2
1941 Male, age 53, unknown 95.1
2665 Male, age 74, both hemispheres 87.7
1889 Female, age 72, unknown 86.8
2241 Male, age 72, unknown 80.2
2409 Female, age 72, unknown 78.5
2699 Male, age 18, unknown 77.3
2583 Male, age 75, right hemisphere 76.9
2590 Female, age 75, unknown 65.9
Superior colliculus
nTPM: 73.0
2668 Female, age 75, unknown 88.5
2087 Female, age 72, unknown 81.1
2261 Male, age 18, unknown 76.3
1796 Male, age 53, unknown 73.9
1913 Female, age 42, unknown 73.2
2664 Male, age 75, both hemispheres 70.2
2587 Male, age 74, left hemisphere 69.3
1895 Male, age 76, right hemisphere 67.0
1995 Male, age 72, unknown 66.6
1839 Male, age 51, unknown 64.5
Ventral tegmental area
nTPM: 78.4
1915 Female, age 42, unknown 89.6
2410 Female, age 72, unknown 82.3
2218 Male, age 76, both hemispheres 80.8
2223 Female, age 72, unknown 75.0
1942 Male, age 51, unknown 73.4
2021 Male, age 53, unknown 69.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 165.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.7
Samples: 139

Max nTPM: 316.3
Min nTPM: 96.3
Std nTPM: 31.6
Median nTPM: 161.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 316.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 273.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 265.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 235.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 228.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 223.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 214.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 212.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 211.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 209.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 208.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 163.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.3
FF:10158-103A5 76 years, female 163.3

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