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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
591.0
nTPM
FANTOM5:
421.4
Scaled Tags Per Million
Pig:
128.2
nTPM
Allen mouse:
5.3
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
591.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 569.6
2301
Female, age 85, both hemispheres
698.6
1984
Male, age 76, both hemispheres
619.5
2090
Male, age 80, both hemispheres
512.4
2188
Female, age 91, both hemispheres
447.8
Dorsal cochlear nucleus nTPM: 591.0
2802
Male, age 74, right hemisphere
747.0
2378
Male, age 80, both hemispheres
662.3
2370
Male, age 61, both hemispheres
533.1
2187
Female, age 91, both hemispheres
529.8
2058
Male, age 76, both hemispheres
483.0
Dorsal tegmental nucleus nTPM: 495.6
2358
Male, age 61, both hemispheres
551.3
1936
Male, age 76, left hemisphere
513.8
2083
Male, age 80, both hemispheres
470.0
2326
Male, age 74, both hemispheres
447.3
Dorsolateral tegmental area nTPM: 398.4
2654
Male, age 80, both hemispheres
474.7
2141
Male, age 76, both hemispheres
422.2
2337
Male, age 61, both hemispheres
394.9
2360
Male, age 74, both hemispheres
371.6
2751
Female, age 85, both hemispheres
328.5
Kolliker-Fuse nucleus nTPM: 534.1
2315
Male, age 76, right hemisphere
741.1
2793
Female, age 91, left hemisphere
450.5
2163
Male, age 80, both hemispheres
410.7
Lateral lemniscal nuclei nTPM: 342.9
2746
Female, age 85, left hemisphere
392.3
2169
Male, age 76, both hemispheres
380.1
2320
Female, age 91, left hemisphere
348.8
2036
Male, age 80, both hemispheres
305.9
2453
Male, age 74, right hemisphere
287.3
Lateral parabrachial nucleus nTPM: 546.9
2792
Male, age 76, both hemispheres
795.7
2013
Male, age 80, both hemispheres
518.3
2139
Female, age 85, right hemisphere
492.2
2790
Male, age 61, both hemispheres
381.6
Lateral vestibular nucleus nTPM: 505.2
2311
Male, age 80, both hemispheres
594.9
2184
Male, age 76, both hemispheres
415.6
Locus coeruleus nTPM: 419.3
2720
Male, age 74, both hemispheres
483.7
2162
Male, age 80, both hemispheres
471.0
2123
Female, age 91, both hemispheres
435.5
2317
Female, age 72, unknown
415.5
1980
Male, age 76, both hemispheres
395.1
2014
Male, age 55, unknown
389.8
2788
Male, age 74, unknown
344.5
Medial parabrachial nucleus nTPM: 452.3
2170
Female, age 91, both hemispheres
482.8
2854
Male, age 80, both hemispheres
477.3
2786
Male, age 76, both hemispheres
457.7
2156
Male, age 61, both hemispheres
427.4
2463
Female, age 85, right hemisphere
416.4
Medial periolivary nuclei nTPM: 368.8
2081
Male, age 80, both hemispheres
463.8
2458
Female, age 91, both hemispheres
394.1
2063
Male, age 76, both hemispheres
357.6
2171
Female, age 85, both hemispheres
318.8
2791
Male, age 74, right hemisphere
309.7
Motor facial nucleus nTPM: 425.5
2795
Female, age 91, both hemispheres
547.2
2697
Female, age 85, both hemispheres
499.9
2126
Male, age 61, both hemispheres
490.6
2327
Male, age 80, both hemispheres
403.1
2062
Male, age 76, both hemispheres
330.9
2365
Male, age 74, right hemisphere
281.0
Motor trigeminal nucleus nTPM: 412.3
2335
Male, age 61, both hemispheres
460.9
2321
Female, age 91, both hemispheres
442.9
2309
Male, age 76, both hemispheres
428.5
2079
Male, age 80, both hemispheres
365.2
2560
Male, age 74, both hemispheres
363.9
Nuclei of the trapezoid body nTPM: 369.7
2166
Male, age 80, both hemispheres
475.0
2368
Female, age 91, both hemispheres
420.0
1983
Male, age 76, both hemispheres
338.4
2159
Male, age 61, both hemispheres
309.7
2735
Female, age 85, both hemispheres
305.6
Nucleus raphe magnus nTPM: 385.8
2051
Male, age 76, both hemispheres
611.8
2328
Male, age 80, both hemispheres
442.4
2172
Female, age 85, both hemispheres
349.0
2459
Female, age 91, both hemispheres
338.3
2160
Male, age 61, both hemispheres
294.1
2455
Male, age 74, both hemispheres
279.2
Paramedian reticular nucleus nTPM: 371.9
2313
Male, age 61, both hemispheres
415.5
2057
Male, age 80, both hemispheres
374.4
2052
Male, age 76, both hemispheres
354.4
2050
Female, age 85, both hemispheres
343.2
Pedunculopontine tegmental nucleus nTPM: 412.2
2334
Male, age 80, both hemispheres
461.6
1921
Female, age 85, both hemispheres
430.4
2338
Male, age 61, both hemispheres
344.5
Pontine nuclei nTPM: 344.0
2115
Male, age 80, left hemisphere
523.3
1968
Male, age 76, left hemisphere
406.4
2787
Female, age 85, both hemispheres
385.2
2319
Female, age 91, both hemispheres
365.1
1863
Male, age 55, unknown
340.1
2109
Female, age 72, unknown
291.8
2727
Male, age 61, right hemisphere
228.0
2454
Male, age 74, left hemisphere
211.9
Pontine raphe nucleus nTPM: 357.3
2853
Male, age 76, midline
374.6
2122
Female, age 85, midline
340.0
Posteroventral cochlear nucleus nTPM: 456.7
2341
Male, age 80, both hemispheres
588.1
2371
Male, age 61, both hemispheres
572.6
2135
Female, age 91, both hemispheres
414.0
2752
Female, age 85, both hemispheres
356.5
2070
Male, age 76, both hemispheres
352.2
Principal sensory trigeminal nucleus nTPM: 359.9
2324
Male, age 76, both hemispheres
477.0
2367
Female, age 91, left hemisphere
334.3
2158
Male, age 61, both hemispheres
328.9
2008
Male, age 80, left hemisphere
299.4
Reticular pontine nucleus, caudal nTPM: 391.2
2092
Male, age 76, both hemispheres
448.0
2332
Male, age 80, right hemisphere
405.5
2457
Female, age 91, both hemispheres
385.3
2559
Male, age 74, both hemispheres
326.1
Reticular pontine nucleus, oral nTPM: 335.6
2366
Female, age 91, both hemispheres
394.3
2167
Male, age 76, both hemispheres
382.2
1939
Male, age 80, both hemispheres
355.2
2012
Female, age 85, both hemispheres
303.6
2361
Male, age 74, both hemispheres
242.5
Reticulotegmental nucleus nTPM: 485.8
2322
Female, age 91, both hemispheres
576.3
2333
Male, age 80, both hemispheres
513.7
2452
Male, age 74, both hemispheres
442.6
2325
Male, age 76, both hemispheres
410.6
Spinal trigeminal nucleus, oral nTPM: 414.3
2164
Male, age 80, both hemispheres
485.1
1978
Male, age 76, both hemispheres
385.2
2737
Female, age 85, both hemispheres
372.5
Subcoeruleus area nTPM: 399.8
2451
Male, age 74, both hemispheres
474.8
2089
Male, age 76, left hemisphere
421.0
2323
Female, age 91, left hemisphere
394.2
1958
Male, age 80, both hemispheres
366.4
2369
Female, age 85, left hemisphere
342.8
Superior olive nTPM: 377.0
2020
Male, age 76, both hemispheres
470.1
2329
Male, age 80, right hemisphere
439.4
2561
Female, age 91, both hemispheres
412.0
2364
Male, age 74, right hemisphere
287.0
1875
Female, age 85, both hemispheres
276.7
Ventral periolivary nuclei nTPM: 388.1
2023
Male, age 76, both hemispheres
425.0
2165
Male, age 80, both hemispheres
405.3
2794
Female, age 91, left hemisphere
361.2
2130
Female, age 85, both hemispheres
360.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 410.4
2161
Male, age 80, both hemispheres
487.4
2840
Female, age 85, both hemispheres
457.7
1959
Male, age 76, both hemispheres
449.5
2456
Female, age 91, both hemispheres
426.5
2359
Male, age 61, both hemispheres
355.0
2449
Male, age 74, both hemispheres
286.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
128.2
Pig sample
Sample description
nTPM
Pons nTPM: 128.2
Samples: 4
Max nTPM: 141.1
Min nTPM: 119.3
Sample A
Female
141.1
Sample B
Female
119.3
Sample C
Male
125.7
Sample D
Male
126.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
