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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:367.7 nTPM
HPA Brain:395.4 nTPM
GTEx:367.7 nTPM
FANTOM5:534.4 Scaled Tags Per Million
Pig:410.7 nTPM
Mouse:679.0 nTPM
Allen mouse:27.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

395.4
Sample id Sample description nTPM
Amygdala
nTPM: 391.9
2814 Male, age 76, right hemisphere 465.3
1987 Female, age 91, left hemisphere 427.7
2514 Male, age 75, right hemisphere 427.5
2517 Female, age 94, left hemisphere 354.2
2695 Female, age 67, right hemisphere 284.9
Basal amygdala
nTPM: 380.7
2110 Male, age 80, left hemisphere 477.5
2243 Female, age 91, right hemisphere 444.9
1955 Male, age 76, both hemispheres 420.0
2685 Female, age 94, left hemisphere 400.3
2609 Male, age 75, right hemisphere 358.6
2827 Female, age 67, right hemisphere 182.9
Central amygdala
nTPM: 379.9
2239 Male, age 80, left hemisphere 456.6
1905 Male, age 76, both hemispheres 405.7
2826 Female, age 94, left hemisphere 360.6
2701 Female, age 91, right hemisphere 347.1
2515 Male, age 75, right hemisphere 329.3
Corticomedial amygdala
nTPM: 395.4
2829 Male, age 80, left hemisphere 545.8
2242 Female, age 91, right hemisphere 425.0
2429 Female, age 94, left hemisphere 424.9
2240 Male, age 76, both hemispheres 392.1
2428 Male, age 75, right hemisphere 377.6
2535 Female, age 67, right hemisphere 206.6
Lateral amygdala
nTPM: 340.3
1883 Male, age 76, both hemispheres 481.3
2534 Female, age 94, left hemisphere 449.3
2516 Male, age 75, right hemisphere 342.3
2256 Male, age 80, left hemisphere 313.9
2255 Female, age 91, right hemisphere 289.4
2830 Female, age 67, right hemisphere 165.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 367.7
Samples: 152

Max nTPM: 894.2
Min nTPM: 53.3
Std nTPM: 135.3
Median nTPM: 359.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 894.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 834.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 706.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 668.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 663.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 602.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 600.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 598.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 587.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 586.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 575.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 572.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 568.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 555.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 551.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 551.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 537.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 528.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 523.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 522.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 506.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 503.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 494.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 479.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 475.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 472.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 466.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 465.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 461.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 459.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 456.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 456.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 449.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 447.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 445.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 445.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 443.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 441.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 439.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 433.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 433.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 430.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 430.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 428.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 428.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 426.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 426.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 423.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 419.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 418.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 418.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 414.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 413.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 409.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 406.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 406.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 406.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 405.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 405.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 403.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 402.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 400.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 399.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 396.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 392.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 389.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 385.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 384.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 378.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 377.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 374.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 373.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 371.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 370.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 362.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 359.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 359.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 356.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 354.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 353.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 353.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 352.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 345.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 343.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 340.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 339.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 339.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 339.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 338.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 332.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 329.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 328.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 318.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 315.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 314.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 308.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 307.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 307.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 307.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 303.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 301.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 300.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 291.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 290.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 289.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 289.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 288.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 287.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 286.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 285.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 284.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 280.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 273.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 271.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 270.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 266.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 259.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 259.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 258.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 256.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 255.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 241.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 240.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 240.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 239.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 235.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 233.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 233.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 230.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 229.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 222.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 222.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 218.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 218.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 214.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 212.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 206.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 204.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 199.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 197.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 197.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 192.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 187.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 173.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 169.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 169.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 165.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 131.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 124.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 53.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

534.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 534.4
FF:10151-102I7 76 years, female 534.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

410.7
Pig sample Sample description nTPM
Amygdala
nTPM: 410.7
Samples: 4

Max nTPM: 575.7
Min nTPM: 322.0
Sample A Female 575.7
Sample B Female 322.0
Sample C Male 351.3
Sample D Male 393.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

679.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 679.0
Samples: 4

Max nTPM: 726.7
Min nTPM: 634.2
Sample A Male 726.7
Sample B Male 634.2
Sample C Female 678.1
Sample D Female 676.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.5
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 27.5
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 27.5

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