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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:496.3 nTPM
FANTOM5:520.5 Scaled Tags Per Million
Pig:557.2 nTPM
Mouse:659.5 nTPM
Allen mouse:24.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

496.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 354.9
2032 Female, age 42, unknown 443.1
2396 Male, age 61, right hemisphere 313.5
2497 Male, age 66, unknown 308.1
Centromedial thalamic nucleus
nTPM: 329.6
2401 Male, age 76, right hemisphere 505.3
2279 Female, age 85, left hemisphere 153.9
Habenula
nTPM: 496.3
1957 Male, age 80, both hemispheres 635.3
2203 Male, age 61, left hemisphere 588.7
2276 Male, age 66, unknown 385.0
2252 Male, age 62, unknown 376.2
Lateral geniculate body
nTPM: 481.8
2106 Female, age 67, right hemisphere 748.8
1953 Male, age 62, unknown 568.5
2399 Male, age 61, left hemisphere 539.1
2035 Female, age 72, unknown 533.6
2575 Female, age 94, right hemisphere 452.5
2841 Male, age 80, both hemispheres 412.7
2857 Male, age 74, right hemisphere 302.1
2659 Male, age 66, unknown 297.2
Lateral thalamic nuclei
nTPM: 443.0
2765 Female, age 67, both hemispheres 644.1
1903 Male, age 76, left hemisphere 482.2
2577 Male, age 74, both hemispheres 433.2
2573 Female, age 94, left hemisphere 409.4
2661 Female, age 72, unknown 246.2
Medial dorsal thalamic nucleus
nTPM: 437.9
1971 Male, age 61, right hemisphere 569.2
2498 Male, age 66, unknown 549.6
1859 Male, age 76, both hemispheres 483.1
2026 Male, age 62, unknown 470.9
1810 Male, age 48, unknown 451.8
2039 Female, age 72, unknown 449.1
2402 Female, age 67, both hemispheres 422.1
2283 Male, age 80, right hemisphere 421.1
2492 Male, age 75, right hemisphere 408.7
2576 Male, age 74, both hemispheres 404.0
2572 Female, age 94, right hemisphere 398.2
1930 Female, age 42, unknown 394.2
2660 Female, age 72, unknown 270.7
Medial geniculate body
nTPM: 348.9
1811 Female, age 42, unknown 450.2
2657 Male, age 74, right hemisphere 370.9
2650 Female, age 94, left hemisphere 359.8
2207 Male, age 80, right hemisphere 333.8
2049 Male, age 76, both hemispheres 332.4
2217 Female, age 72, unknown 298.5
2571 Male, age 75, right hemisphere 296.8
Nucleus reuniens
nTPM: 411.7
2212 Female, age 67, left hemisphere 637.4
2205 Male, age 80, left hemisphere 354.1
2210 Female, age 85, left hemisphere 243.6
Nucleus rhomboideus
nTPM: 320.7
2206 Male, age 80, both hemispheres 474.1
2213 Female, age 67, left hemisphere 290.7
2280 Female, age 85, left hemisphere 197.3
Posterior thalamic nucleus
nTPM: 329.7
2266 Male, age 76, right hemisphere 378.4
2649 Female, age 94, both hemispheres 354.8
2495 Female, age 67, right hemisphere 327.1
2655 Male, age 74, right hemisphere 258.5
Pulvinar
nTPM: 423.7
1972 Male, age 62, unknown 551.0
2398 Male, age 61, left hemisphere 547.0
1932 Male, age 80, right hemisphere 492.9
1929 Male, age 48, unknown 437.9
2214 Male, age 76, right hemisphere 414.9
1899 Female, age 42, unknown 407.1
2496 Female, age 67, right hemisphere 367.7
2724 Male, age 74, right hemisphere 351.9
2499 Male, age 66, unknown 340.5
2582 Female, age 72, unknown 326.2
Subthalamic nucleus
nTPM: 421.0
2124 Male, age 62, unknown 499.2
2275 Male, age 66, unknown 487.1
2406 Female, age 72, unknown 483.2
2658 Male, age 74, both hemispheres 456.8
2282 Male, age 61, both hemispheres 431.6
2779 Female, age 42, unknown 365.9
2056 Female, age 72, unknown 349.1
2216 Male, age 48, unknown 295.1
Ventral posterolateral thalamic nucleus
nTPM: 402.2
2740 Male, age 76, right hemisphere 505.3
2397 Male, age 61, right hemisphere 459.5
2578 Male, age 74, both hemispheres 419.1
2197 Male, age 80, both hemispheres 411.7
2570 Male, age 75, right hemisphere 405.8
2581 Female, age 72, unknown 211.8
Ventral posteromedial thalamic nucleus
nTPM: 428.2
2202 Male, age 61, left hemisphere 514.5
2653 Male, age 74, both hemispheres 505.5
2281 Male, age 75, right hemisphere 393.9
2758 Male, age 80, both hemispheres 378.1
2127 Male, age 76, right hemisphere 348.8
Ventral thalamic nuclei
nTPM: 398.1
1845 Male, age 48, unknown 502.0
1860 Male, age 76, both hemispheres 484.8
2652 Male, age 74, left hemisphere 434.1
1912 Female, age 42, unknown 421.6
2580 Male, age 66, unknown 385.1
2285 Male, age 62, unknown 360.9
2291 Female, age 72, unknown 355.4
2204 Male, age 80, both hemispheres 331.9
2858 Female, age 72, unknown 306.8
Zona incerta
nTPM: 383.2
2215 Male, age 66, unknown 537.3
2822 Male, age 74, right hemisphere 432.5
2403 Male, age 62, unknown 342.7
2208 Male, age 80, right hemisphere 329.0
2663 Female, age 72, unknown 274.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

520.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 520.5
FF:10154-103A1 76 years, female 520.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

557.2
Pig sample Sample description nTPM
Thalamus
nTPM: 557.2
Samples: 4

Max nTPM: 716.6
Min nTPM: 424.0
Sample A Female 716.6
Sample B Female 463.0
Sample C Male 625.3
Sample D Male 424.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

659.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 659.5
Samples: 4

Max nTPM: 734.5
Min nTPM: 601.5
Sample A Male 602.5
Sample B Male 734.5
Sample C Female 601.5
Sample D Female 699.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 24.7
83161 Antisense, RP_040407_01_G06, Mouse strain C57BL/6J (56 days, male) 24.7
70812889 Antisense, RP_050712_02_G12, Mouse strain C57BL/6J (56 days, male) 24.6

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