We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS15A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RPS15A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:764.0 nTPM
HPA Brain:179.2 nTPM
GTEx:764.0 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:87.4 nTPM
Mouse:311.0 nTPM
Allen mouse:4.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.2
Sample id Sample description nTPM
Amygdala
nTPM: 179.2
2695 Female, age 67, right hemisphere 221.5
2514 Male, age 75, right hemisphere 207.2
1987 Female, age 91, left hemisphere 162.7
2814 Male, age 76, right hemisphere 152.2
2517 Female, age 94, left hemisphere 152.1
Basal amygdala
nTPM: 140.5
2609 Male, age 75, right hemisphere 176.2
2827 Female, age 67, right hemisphere 173.1
2685 Female, age 94, left hemisphere 127.7
1955 Male, age 76, both hemispheres 125.4
2110 Male, age 80, left hemisphere 122.5
2243 Female, age 91, right hemisphere 118.3
Central amygdala
nTPM: 150.6
2826 Female, age 94, left hemisphere 224.9
2515 Male, age 75, right hemisphere 180.5
1905 Male, age 76, both hemispheres 131.4
2239 Male, age 80, left hemisphere 113.8
2701 Female, age 91, right hemisphere 102.3
Corticomedial amygdala
nTPM: 141.6
2428 Male, age 75, right hemisphere 161.4
2535 Female, age 67, right hemisphere 157.7
2240 Male, age 76, both hemispheres 156.6
2242 Female, age 91, right hemisphere 138.7
2429 Female, age 94, left hemisphere 118.8
2829 Male, age 80, left hemisphere 116.0
Lateral amygdala
nTPM: 157.4
2516 Male, age 75, right hemisphere 204.3
2830 Female, age 67, right hemisphere 194.6
2534 Female, age 94, left hemisphere 187.5
2256 Male, age 80, left hemisphere 141.8
1883 Male, age 76, both hemispheres 111.8
2255 Female, age 91, right hemisphere 104.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

764.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 764.0
Samples: 152

Max nTPM: 2401.4
Min nTPM: 362.0
Std nTPM: 341.5
Median nTPM: 680.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2401.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2353.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2133.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1857.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1683.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1641.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1543.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1538.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1390.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1328.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1305.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1235.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1222.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1166.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1119.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1119.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1116.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1058.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1054.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1020.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 983.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 973.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 971.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 968.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 953.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 934.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 928.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 922.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 921.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 917.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 913.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 891.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 888.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 887.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 857.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 854.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 845.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 842.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 837.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 836.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 818.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 817.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 813.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 800.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 787.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 783.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 782.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 779.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 776.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 771.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 770.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 750.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 741.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 738.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 737.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 734.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 733.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 732.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 732.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 728.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 726.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 723.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 717.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 716.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 715.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 715.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 713.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 711.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 707.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 694.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 692.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 690.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 690.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 688.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 687.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 682.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 678.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 677.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 675.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 664.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 660.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 659.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 659.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 656.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 655.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 655.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 645.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 644.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 641.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 637.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 633.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 631.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 629.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 629.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 621.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 620.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 620.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 618.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 618.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 617.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 612.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 607.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 603.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 599.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 597.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 597.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 595.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 592.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 584.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 584.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 583.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 579.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 573.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 565.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 565.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 564.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 557.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 556.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 555.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 554.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 550.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 548.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 548.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 525.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 521.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 521.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 517.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 511.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 504.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 503.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 503.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 496.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 492.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 485.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 484.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 483.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 473.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 469.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 468.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 462.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 456.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 454.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 452.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 449.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 448.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 401.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 400.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 389.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 383.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 382.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 379.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 362.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 18.7
FF:10151-102I7 76 years, female 18.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.4
Pig sample Sample description nTPM
Amygdala
nTPM: 87.4
Samples: 4

Max nTPM: 107.3
Min nTPM: 54.5
Sample A Female 99.4
Sample B Female 107.3
Sample C Male 88.3
Sample D Male 54.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 311.0
Samples: 4

Max nTPM: 319.5
Min nTPM: 302.7
Sample A Male 302.7
Sample B Male 318.6
Sample C Female 319.5
Sample D Female 303.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.9
74357560 Antisense, RP_051214_01_B11, Mouse strain C57BL/6J (56 days, male) 5.2
68862012 Antisense, RP_050301_01_C11, Mouse strain C57BL/6J (56 days, male) 4.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org