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RPS15A
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:492.6 nTPM
GTEx:492.6 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:57.0 nTPM
Mouse:610.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

492.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 492.6
Samples: 105

Max nTPM: 703.4
Min nTPM: 348.8
Std nTPM: 73.3
Median nTPM:
35_1 74 years, female 703.4
495_1 57 years, female 662.1
153_1 70 years, female 660.6
126_1 63 years, male 632.0
120_1 70 years, female 624.3
17_1 71 years, male 622.7
246_1 77 years, male 615.4
41_1 94 years, female 614.2
321_1 62 years, female 602.7
389_1 86 years, female 588.6
307_1 66 years, female 586.9
162_1 79 years, female 581.7
414_1 84 years, female 570.6
139_1 64 years, female 570.0
2_1 77 years, female 569.4
145_1 84 years, male 566.7
237_1 82 years, male 566.0
491_1 89 years, female 565.0
375_1 74 years, female 562.9
526_1 61 years, male 559.1
4_1 88 years, female 555.4
308_1 70 years, female 555.2
377_1 82 years, female 554.7
384_1 83 years, male 554.3
396_1 62 years, male 551.7
322_1 76 years, male 549.2
189_1 76 years, male 542.6
315_1 62 years, female 539.5
319_1 81 years, male 534.1
376_1 75 years, female 532.1
142_1 61 years, female 531.6
379_1 60 years, male 530.8
466_1 57 years, female 527.7
137_1 83 years, male 525.8
415_1 77 years, female 525.0
265_1 87 years, male 516.7
452_1 88 years, female 514.4
117_1 61 years, male 513.8
6_1 73 years, female 513.2
490_1 67 years, female 511.5
447_1 81 years, male 509.9
386_1 76 years, male 508.9
81_1 67 years, male 508.7
217_1 76 years, male 507.2
404_1 82 years, female 505.5
501_1 88 years, male 505.0
405_1 91 years, male 503.5
119_1 70 years, female 501.0
499_1 55 years, female 498.9
347_1 72 years, male 498.3
311_1 78 years, male 498.0
254_1 77 years, female 493.3
320_1 89 years, female 493.0
518_1 75 years, female 490.8
355_1 70 years, female 488.7
229_1 69 years, female 485.5
394_1 75 years, female 484.7
99_1 64 years, male 480.4
89_1 63 years, male 480.3
468_1 89 years, male 478.8
218_1 71 years, female 476.8
32_1 67 years, male 476.6
109_1 81 years, female 474.4
42_1 85 years, male 472.0
173_1 67 years, male 471.8
18_1 88 years, male 468.2
266_1 85 years, male 467.1
115_1 83 years, male 464.3
413_1 59 years, female 463.1
243_1 75 years, male 454.7
251_1 78 years, male 452.3
335_1 73 years, female 448.0
316_1 62 years, male 443.0
288_1 66 years, female 441.7
177_1 74 years, male 440.1
324_1 76 years, male 437.7
172_1 72 years, female 436.4
354_1 81 years, female 436.4
480_1 63 years, male 435.8
286_1 68 years, female 435.0
406_1 79 years, male 431.5
313_1 79 years, female 422.8
349_1 83 years, male 416.3
149_1 88 years, male 415.2
517_1 88 years, male 415.0
314_1 67 years, male 414.7
264_1 73 years, female 413.5
348_1 84 years, male 413.4
352_1 62 years, male 412.4
317_1 60 years, male 412.0
43_1 64 years, female 410.8
351_1 91 years, male 407.7
503_1 68 years, male 407.4
318_1 68 years, male 405.1
295_1 61 years, female 402.6
425_1 59 years, female 395.4
292_1 71 years, male 395.3
9_1 66 years, female 392.9
353_1 82 years, female 392.6
163_1 78 years, male 390.0
291_1 76 years, male 390.0
293_1 68 years, female 385.6
506_1 65 years, male 357.6
356_1 87 years, female 354.7
350_1 84 years, female 348.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 67.1
FF:10030-101E3 24-65 years, mixed 67.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.0
Pig sample Sample description nTPM
Retina
nTPM: 57.0
Samples: 4

Max nTPM: 66.4
Min nTPM: 47.0
Sample A Female 59.9
Sample B Female 47.0
Sample C Male 66.4
Sample D Male 54.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

610.2
Mouse sample Sample description nTPM
Retina
nTPM: 610.3
Samples: 4

Max nTPM: 682.3
Min nTPM: 491.4
Sample A Male 682.3
Sample B Male 491.4
Sample C Female 648.7
Sample D Female 618.6

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