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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:864.9 nTPM
HPA Brain:236.7 nTPM
GTEx:864.9 nTPM
FANTOM5:46.2 Scaled Tags Per Million
Pig:127.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 189.9
1981 Female, age 72, midline 238.6
2565 Male, age 75, midline 237.7
2048 Male, age 55, midline 214.0
2816 Male, age 47, midline 137.3
2194 Female, age 79, both hemispheres 121.7
Cervical spinal cord, dorsal horn
nTPM: 230.5
2069 Male, age 47, both hemispheres 317.4
2173 Female, age 72, unknown 283.4
1877 Male, age 55, unknown 234.0
2296 Male, age 66, both hemispheres 233.9
2721 Male, age 90, both hemispheres 168.8
2297 Male, age 75, both hemispheres 145.3
Cervical spinal cord, ventral horn
nTPM: 236.7
2098 Female, age 72, unknown 368.2
2809 Male, age 90, both hemispheres 292.5
2480 Male, age 75, both hemispheres 281.3
2068 Male, age 55, unknown 204.9
2295 Male, age 66, both hemispheres 178.0
2820 Female, age 79, both hemispheres 95.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

864.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 864.9
Samples: 159

Max nTPM: 1647.6
Min nTPM: 356.9
Std nTPM: 268.6
Median nTPM: 818.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1647.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1636.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1599.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1561.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1539.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1431.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1422.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1406.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1398.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1381.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1371.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1334.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1317.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1304.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1285.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1281.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1255.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1241.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1240.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1221.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1161.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1133.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1125.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1122.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1110.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1098.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1097.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1090.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1088.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1076.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1070.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1064.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1053.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1043.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1040.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1040.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1023.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1009.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1004.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1000.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 999.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 998.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 996.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 994.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 990.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 983.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 983.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 981.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 978.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 970.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 960.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 949.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 945.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 940.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 940.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 938.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 933.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 924.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 898.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 897.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 893.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 891.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 883.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 878.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 877.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 875.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 871.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 864.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 864.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 862.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 858.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 857.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 855.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 846.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 845.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 844.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 841.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 833.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 830.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 818.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 815.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 815.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 813.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 813.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 804.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 800.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 794.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 788.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 782.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 777.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 777.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 771.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 764.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 762.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 758.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 756.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 754.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 748.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 746.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 744.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 733.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 726.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 725.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 725.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 725.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 724.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 724.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 722.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 721.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 713.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 710.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 697.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 696.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 693.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 687.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 681.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 679.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 677.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 671.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 668.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 663.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 654.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 654.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 653.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 652.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 649.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 647.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 646.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 644.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 640.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 631.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 621.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 614.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 608.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 605.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 604.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 593.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 591.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 586.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 584.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 584.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 568.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 562.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 554.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 553.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 552.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 550.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 544.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 529.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 528.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 523.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 511.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 486.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 480.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 479.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 432.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 379.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 358.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 356.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 46.2
FF:10181-103D1 60 years, female 52.9
FF:10159-103A6 76 years, female 39.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 127.8
Samples: 4

Max nTPM: 193.0
Min nTPM: 80.2
Sample A Female 88.7
Sample B Female 149.2
Sample C Male 193.0
Sample D Male 80.2
Ventral spinal cord
nTPM: 100.2
Samples: 4

Max nTPM: 123.6
Min nTPM: 91.0
Sample A Female 91.9
Sample B Female 94.4
Sample C Male 123.6
Sample D Male 91.0

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