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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:349.2 nTPM
HPA Brain:233.6 nTPM
GTEx:349.2 nTPM
FANTOM5:364.8 Scaled Tags Per Million
Pig:105.8 nTPM
Mouse:723.6 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.6
Sample id Sample description nTPM
Amygdala
nTPM: 223.1
2814 Male, age 76, right hemisphere 290.4
2695 Female, age 67, right hemisphere 219.7
2514 Male, age 75, right hemisphere 217.9
1987 Female, age 91, left hemisphere 201.4
2517 Female, age 94, left hemisphere 185.9
Basal amygdala
nTPM: 223.1
2609 Male, age 75, right hemisphere 264.7
2243 Female, age 91, right hemisphere 251.6
2685 Female, age 94, left hemisphere 225.7
1955 Male, age 76, both hemispheres 219.7
2110 Male, age 80, left hemisphere 196.8
2827 Female, age 67, right hemisphere 180.3
Central amygdala
nTPM: 233.6
1905 Male, age 76, both hemispheres 255.7
2826 Female, age 94, left hemisphere 236.5
2701 Female, age 91, right hemisphere 227.2
2515 Male, age 75, right hemisphere 225.9
2239 Male, age 80, left hemisphere 222.6
Corticomedial amygdala
nTPM: 207.5
2829 Male, age 80, left hemisphere 239.9
2242 Female, age 91, right hemisphere 237.1
2428 Male, age 75, right hemisphere 206.1
2429 Female, age 94, left hemisphere 190.1
2240 Male, age 76, both hemispheres 188.5
2535 Female, age 67, right hemisphere 183.5
Lateral amygdala
nTPM: 205.6
1883 Male, age 76, both hemispheres 244.9
2534 Female, age 94, left hemisphere 232.0
2516 Male, age 75, right hemisphere 207.2
2255 Female, age 91, right hemisphere 202.4
2256 Male, age 80, left hemisphere 187.1
2830 Female, age 67, right hemisphere 160.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 349.2
Samples: 152

Max nTPM: 831.1
Min nTPM: 105.4
Std nTPM: 103.5
Median nTPM: 333.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 831.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 738.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 718.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 602.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 550.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 540.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 532.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 516.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 511.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 498.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 488.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 484.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 472.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 471.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 461.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 458.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 456.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 455.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 452.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 452.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 451.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 446.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 444.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 437.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 434.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 426.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 425.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 424.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 423.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 420.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 418.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 416.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 415.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 412.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 404.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 403.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 402.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 401.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 399.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 395.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 394.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 393.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 393.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 392.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 392.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 392.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 390.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 383.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 381.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 379.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 378.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 376.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 375.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 373.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 370.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 370.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 370.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 364.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 361.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 358.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 357.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 355.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 351.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 351.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 348.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 347.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 344.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 344.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 343.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 343.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 342.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 341.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 336.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 335.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 334.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 334.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 332.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 331.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 331.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 331.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 329.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 329.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 327.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 327.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 326.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 325.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 324.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 322.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 322.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 320.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 320.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 318.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 317.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 317.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 315.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 312.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 311.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 310.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 306.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 305.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 301.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 301.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 300.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 299.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 298.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 298.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 297.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 295.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 295.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 291.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 290.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 289.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 286.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 285.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 283.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 283.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 282.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 280.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 274.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 272.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 271.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 271.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 270.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 267.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 267.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 266.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 264.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 259.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 256.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 252.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 251.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 250.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 250.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 246.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 243.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 233.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 231.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 230.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 228.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 226.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 222.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 222.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 219.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 218.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 209.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 206.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 204.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 201.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 191.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 172.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 137.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 105.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

364.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 364.8
FF:10151-102I7 76 years, female 364.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.8
Pig sample Sample description nTPM
Amygdala
nTPM: 105.8
Samples: 4

Max nTPM: 149.7
Min nTPM: 76.7
Sample A Female 149.7
Sample B Female 76.7
Sample C Male 94.9
Sample D Male 101.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

723.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 723.6
Samples: 4

Max nTPM: 779.2
Min nTPM: 697.3
Sample A Male 779.2
Sample B Male 701.9
Sample C Female 697.3
Sample D Female 715.9

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