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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:307.0 nTPM
HPA Brain:202.8 nTPM
GTEx:307.0 nTPM
FANTOM5:327.4 Scaled Tags Per Million
Pig:81.9 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 195.2
2194 Female, age 79, both hemispheres 243.1
2565 Male, age 75, midline 199.8
1981 Female, age 72, midline 198.0
2816 Male, age 47, midline 192.5
2048 Male, age 55, midline 142.7
Cervical spinal cord, dorsal horn
nTPM: 186.3
2296 Male, age 66, both hemispheres 226.5
2173 Female, age 72, unknown 215.2
2721 Male, age 90, both hemispheres 179.9
2069 Male, age 47, both hemispheres 175.8
2297 Male, age 75, both hemispheres 160.4
1877 Male, age 55, unknown 160.1
Cervical spinal cord, ventral horn
nTPM: 202.8
2820 Female, age 79, both hemispheres 231.8
2068 Male, age 55, unknown 215.2
2480 Male, age 75, both hemispheres 213.9
2809 Male, age 90, both hemispheres 187.9
2295 Male, age 66, both hemispheres 186.2
2098 Female, age 72, unknown 181.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

307.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 307.0
Samples: 159

Max nTPM: 465.3
Min nTPM: 151.9
Std nTPM: 63.2
Median nTPM: 303.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 465.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 460.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 460.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 453.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 435.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 434.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 432.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 430.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 422.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 418.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 418.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 409.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 407.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 404.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 400.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 396.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 395.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 384.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 379.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 379.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 378.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 371.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 370.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 370.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 367.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 363.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 362.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 362.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 361.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 358.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 358.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 356.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 356.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 355.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 354.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 353.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 351.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 348.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 347.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 345.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 344.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 344.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 344.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 342.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 341.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 340.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 339.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 336.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 335.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 333.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 333.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 331.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 330.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 329.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 329.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 328.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 327.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 324.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 324.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 324.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 324.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 323.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 322.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 322.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 321.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 320.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 318.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 312.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 312.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 310.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 310.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 310.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 309.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 308.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 307.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 306.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 306.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 306.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 305.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 303.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 301.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 301.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 298.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 298.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 298.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 297.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 297.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 297.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 296.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 292.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 292.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 291.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 289.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 289.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 289.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 289.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 288.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 287.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 287.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 284.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 284.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 283.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 281.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 280.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 280.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 279.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 279.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 279.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 278.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 278.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 277.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 275.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 274.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 272.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 268.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 267.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 266.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 265.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 264.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 261.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 261.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 258.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 258.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 257.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 256.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 256.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 252.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 252.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 251.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 251.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 248.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 248.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 247.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 246.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 246.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 244.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 238.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 238.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 235.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 234.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 231.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 230.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 224.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 224.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 224.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 222.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 220.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 220.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 217.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 217.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 214.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 212.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 197.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 194.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 194.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 194.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 170.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 164.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 151.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

327.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 327.4
FF:10181-103D1 60 years, female 347.2
FF:10159-103A6 76 years, female 307.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 81.9
Samples: 4

Max nTPM: 87.5
Min nTPM: 72.1
Sample A Female 86.9
Sample B Female 72.1
Sample C Male 87.5
Sample D Male 81.0
Ventral spinal cord
nTPM: 78.2
Samples: 4

Max nTPM: 82.4
Min nTPM: 74.5
Sample A Female 74.7
Sample B Female 82.4
Sample C Male 81.0
Sample D Male 74.5

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