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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:267.3 nTPM
FANTOM5:405.3 Scaled Tags Per Million
Pig:86.6 nTPM

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.3
Sample id Sample description nTPM
Area postrema
nTPM: 189.4
2799 Male, age 61, both hemispheres 216.8
2054 Male, age 76, both hemispheres 182.4
2306 Male, age 80, both hemispheres 169.1
Dorsal medullary reticular nucleus
nTPM: 215.8
2040 Female, age 85, both hemispheres 268.7
2373 Male, age 61, both hemispheres 189.9
2088 Male, age 76, both hemispheres 189.0
Dorsal motor vagal complex
nTPM: 230.9
2844 Male, age 55, unknown 288.9
2813 Female, age 72, unknown 274.7
2000 Male, age 74, unknown 256.4
2133 Female, age 91, both hemispheres 255.7
2643 Male, age 74, both hemispheres 235.6
2797 Male, age 61, both hemispheres 193.9
2185 Male, age 76, both hemispheres 192.9
2807 Female, age 85, both hemispheres 149.0
Gigantocellular reticular nuclei, medullary
nTPM: 208.1
2462 Male, age 74, both hemispheres 255.1
2310 Male, age 80, both hemispheres 224.9
2314 Male, age 61, both hemispheres 210.2
2387 Female, age 91, both hemispheres 200.9
1876 Female, age 85, both hemispheres 197.5
2022 Male, age 76, right hemisphere 160.1
Gigantocellular reticular nuclei, pars
nTPM: 238.5
2168 Male, age 76, both hemispheres 307.2
2084 Female, age 85, both hemispheres 246.9
2706 Male, age 80, both hemispheres 219.9
2336 Male, age 61, both hemispheres 214.6
2330 Male, age 80, both hemispheres 204.0
Inferior olive
nTPM: 223.4
2563 Male, age 74, both hemispheres 274.5
2628 Female, age 91, both hemispheres 265.6
2085 Female, age 85, both hemispheres 227.1
2178 Male, age 61, both hemispheres 179.0
2379 Male, age 80, both hemispheres 171.0
Lateral medullary reticular nucleus
nTPM: 235.5
2044 Male, age 76, both hemispheres 289.8
2804 Female, age 91, both hemispheres 236.4
2374 Male, age 61, both hemispheres 228.3
2305 Male, age 74, both hemispheres 226.7
2852 Male, age 80, both hemispheres 221.7
2190 Female, age 85, both hemispheres 210.1
Medial olivary nucleus
nTPM: 186.8
2851 Male, age 80, both hemispheres 217.2
2138 Female, age 91, both hemispheres 190.6
1962 Male, age 76, both hemispheres 184.5
1943 Male, age 61, both hemispheres 154.7
Medial vestibular nucleus
nTPM: 267.3
2801 Male, age 74, both hemispheres 309.6
2624 Male, age 61, both hemispheres 304.1
2134 Male, age 76, both hemispheres 277.6
2743 Female, age 85, both hemispheres 245.2
2803 Female, age 91, both hemispheres 240.8
2093 Male, age 80, both hemispheres 226.4
Motor hypoglossal nucleus
nTPM: 243.0
2461 Male, age 61, both hemispheres 278.4
2125 Female, age 91, both hemispheres 261.0
2182 Male, age 80, both hemispheres 245.8
2132 Female, age 85, both hemispheres 240.6
2277 Male, age 76, both hemispheres 189.0
Nucleus ambiguus
nTPM: 246.5
2096 Female, age 85, both hemispheres 301.5
2071 Male, age 76, both hemispheres 191.4
Nucleus cuneatus
nTPM: 202.7
2564 Male, age 74, both hemispheres 254.9
2131 Male, age 76, both hemispheres 234.6
2562 Male, age 61, both hemispheres 219.1
2100 Male, age 76, both hemispheres 201.8
2376 Male, age 61, both hemispheres 197.6
2805 Female, age 91, both hemispheres 193.4
2808 Female, age 85, both hemispheres 179.5
2381 Male, age 80, both hemispheres 179.0
2380 Male, age 80, both hemispheres 164.7
Nucleus gracilis
nTPM: 187.9
2627 Male, age 74, both hemispheres 254.8
2382 Male, age 80, both hemispheres 169.1
2299 Female, age 85, both hemispheres 139.8
Nucleus raphe obscurus
nTPM: 220.9
2845 Female, age 85, midline 267.1
2800 Male, age 61, midline 231.2
2142 Male, age 76, midline 164.4
Nucleus raphe pallidus
nTPM: 234.3
2183 Male, age 80, midline 283.6
1924 Male, age 61, midline 259.0
2145 Male, age 76, midline 160.3
Nucleus tractus solitarii
nTPM: 175.4
2656 Male, age 76, both hemispheres 227.8
2307 Male, age 80, both hemispheres 187.0
2191 Female, age 85, both hemispheres 148.1
2144 Female, age 91, right hemisphere 138.7
Parvicellular reticular nuclei
nTPM: 236.1
2095 Male, age 76, both hemispheres 238.8
2119 Male, age 80, both hemispheres 238.2
2558 Male, age 74, both hemispheres 231.3
Parvicellular reticular nuclei, medullary
nTPM: 229.6
2189 Female, age 91, both hemispheres 260.3
2091 Female, age 85, both hemispheres 218.4
2181 Male, age 80, left hemisphere 210.1
Peritrigeminal nucleus
nTPM: 259.8
2136 Male, age 76, both hemispheres 272.0
2179 Male, age 61, both hemispheres 261.6
2067 Female, age 85, both hemispheres 245.9
Prepositus hypoglossal nucleus
nTPM: 230.8
2855 Female, age 85, right hemisphere 251.8
2086 Male, age 80, both hemispheres 209.7
Spinal trigeminal nucleus, caudal
nTPM: 233.0
2390 Female, age 91, both hemispheres 278.6
2447 Male, age 76, both hemispheres 242.9
2642 Male, age 74, both hemispheres 234.3
2308 Male, age 80, both hemispheres 212.0
2312 Male, age 61, both hemispheres 197.4
Spinal trigeminal nucleus, interpolar
nTPM: 265.7
2066 Male, age 76, right hemisphere 361.6
2625 Male, age 61, both hemispheres 328.1
2389 Female, age 91, both hemispheres 223.7
2033 Male, age 80, both hemispheres 217.9
2386 Female, age 85, both hemispheres 197.4
Spinal vestibular nucleus
nTPM: 233.4
2748 Male, age 76, both hemispheres 243.9
2780 Male, age 80, both hemispheres 240.9
2796 Male, age 61, both hemispheres 234.0
2806 Female, age 85, both hemispheres 233.7
2186 Female, age 91, both hemispheres 230.4
2384 Male, age 74, both hemispheres 217.8
Superior vestibular nucleus
nTPM: 203.1
2061 Male, age 76, both hemispheres 218.4
2015 Male, age 80, both hemispheres 213.6
2383 Male, age 74, both hemispheres 177.2
Ventral medullary reticular nucleus
nTPM: 215.9
2060 Male, age 76, both hemispheres 233.1
2372 Male, age 61, both hemispheres 198.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 236.7
1986 Male, age 76, both hemispheres 278.3
2741 Female, age 85, both hemispheres 255.9
2180 Male, age 61, both hemispheres 240.3
2302 Female, age 91, both hemispheres 219.6
2118 Male, age 80, both hemispheres 189.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

405.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 405.3
FF:10038-101F2 18-64 years, mixed 595.6
FF:10155-103A2 76 years, female 332.9
FF:10174-103C3 60 years, female 287.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 86.6
Samples: 4

Max nTPM: 96.5
Min nTPM: 78.4
Sample A Female 85.5
Sample B Female 78.4
Sample C Male 96.5
Sample D Male 86.1

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