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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:258.6 nTPM
FANTOM5:309.0 Scaled Tags Per Million
Pig:108.7 nTPM
Mouse:914.8 nTPM

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 229.0
2396 Male, age 61, right hemisphere 262.2
2032 Female, age 42, unknown 226.8
2497 Male, age 66, unknown 197.9
Centromedial thalamic nucleus
nTPM: 216.3
2401 Male, age 76, right hemisphere 260.0
2279 Female, age 85, left hemisphere 172.7
Habenula
nTPM: 258.6
2203 Male, age 61, left hemisphere 304.5
1957 Male, age 80, both hemispheres 292.5
2276 Male, age 66, unknown 251.8
2252 Male, age 62, unknown 185.7
Lateral geniculate body
nTPM: 254.8
1953 Male, age 62, unknown 313.6
2106 Female, age 67, right hemisphere 295.3
2399 Male, age 61, left hemisphere 271.5
2035 Female, age 72, unknown 265.6
2857 Male, age 74, right hemisphere 243.6
2659 Male, age 66, unknown 233.7
2575 Female, age 94, right hemisphere 214.2
2841 Male, age 80, both hemispheres 200.6
Lateral thalamic nuclei
nTPM: 226.4
1903 Male, age 76, left hemisphere 253.0
2765 Female, age 67, both hemispheres 226.8
2573 Female, age 94, left hemisphere 223.4
2577 Male, age 74, both hemispheres 223.2
2661 Female, age 72, unknown 205.8
Medial dorsal thalamic nucleus
nTPM: 247.1
1971 Male, age 61, right hemisphere 302.0
2572 Female, age 94, right hemisphere 294.8
2498 Male, age 66, unknown 288.8
1810 Male, age 48, unknown 282.1
1859 Male, age 76, both hemispheres 270.5
2026 Male, age 62, unknown 243.2
2039 Female, age 72, unknown 234.5
1930 Female, age 42, unknown 233.9
2576 Male, age 74, both hemispheres 231.8
2283 Male, age 80, right hemisphere 230.2
2492 Male, age 75, right hemisphere 202.1
2660 Female, age 72, unknown 201.4
2402 Female, age 67, both hemispheres 197.0
Medial geniculate body
nTPM: 224.8
1811 Female, age 42, unknown 270.6
2650 Female, age 94, left hemisphere 257.4
2571 Male, age 75, right hemisphere 245.8
2657 Male, age 74, right hemisphere 217.1
2207 Male, age 80, right hemisphere 215.9
2217 Female, age 72, unknown 197.4
2049 Male, age 76, both hemispheres 169.4
Nucleus reuniens
nTPM: 206.9
2212 Female, age 67, left hemisphere 245.1
2205 Male, age 80, left hemisphere 214.5
2210 Female, age 85, left hemisphere 161.3
Nucleus rhomboideus
nTPM: 204.5
2206 Male, age 80, both hemispheres 284.7
2280 Female, age 85, left hemisphere 173.8
2213 Female, age 67, left hemisphere 154.8
Posterior thalamic nucleus
nTPM: 246.5
2649 Female, age 94, both hemispheres 353.7
2655 Male, age 74, right hemisphere 226.0
2266 Male, age 76, right hemisphere 225.2
2495 Female, age 67, right hemisphere 181.2
Pulvinar
nTPM: 244.5
1972 Male, age 62, unknown 288.1
2398 Male, age 61, left hemisphere 286.1
1932 Male, age 80, right hemisphere 261.4
2724 Male, age 74, right hemisphere 256.3
2582 Female, age 72, unknown 243.5
1929 Male, age 48, unknown 242.5
1899 Female, age 42, unknown 242.2
2214 Male, age 76, right hemisphere 225.3
2499 Male, age 66, unknown 206.6
2496 Female, age 67, right hemisphere 193.4
Subthalamic nucleus
nTPM: 237.1
2406 Female, age 72, unknown 305.9
2124 Male, age 62, unknown 269.0
2282 Male, age 61, both hemispheres 263.1
2275 Male, age 66, unknown 255.1
2658 Male, age 74, both hemispheres 233.7
2779 Female, age 42, unknown 220.9
2216 Male, age 48, unknown 177.7
2056 Female, age 72, unknown 171.8
Ventral posterolateral thalamic nucleus
nTPM: 239.4
2740 Male, age 76, right hemisphere 295.1
2397 Male, age 61, right hemisphere 267.5
2197 Male, age 80, both hemispheres 234.6
2578 Male, age 74, both hemispheres 220.0
2570 Male, age 75, right hemisphere 217.7
2581 Female, age 72, unknown 201.6
Ventral posteromedial thalamic nucleus
nTPM: 233.0
2202 Male, age 61, left hemisphere 296.9
2758 Male, age 80, both hemispheres 233.9
2653 Male, age 74, both hemispheres 223.7
2281 Male, age 75, right hemisphere 205.4
2127 Male, age 76, right hemisphere 205.3
Ventral thalamic nuclei
nTPM: 239.1
1845 Male, age 48, unknown 271.3
1912 Female, age 42, unknown 260.8
1860 Male, age 76, both hemispheres 259.9
2580 Male, age 66, unknown 249.0
2285 Male, age 62, unknown 235.1
2858 Female, age 72, unknown 230.5
2204 Male, age 80, both hemispheres 221.3
2291 Female, age 72, unknown 212.6
2652 Male, age 74, left hemisphere 211.8
Zona incerta
nTPM: 209.9
2215 Male, age 66, unknown 221.1
2663 Female, age 72, unknown 218.8
2208 Male, age 80, right hemisphere 213.6
2822 Male, age 74, right hemisphere 204.9
2403 Male, age 62, unknown 191.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 309.0
FF:10154-103A1 76 years, female 309.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.7
Pig sample Sample description nTPM
Thalamus
nTPM: 108.7
Samples: 4

Max nTPM: 160.5
Min nTPM: 74.1
Sample A Female 160.5
Sample B Female 92.7
Sample C Male 107.3
Sample D Male 74.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

914.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 914.8
Samples: 4

Max nTPM: 999.1
Min nTPM: 761.3
Sample A Male 761.3
Sample B Male 999.1
Sample C Female 899.8
Sample D Female 999.0

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