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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:854.5 nTPM
FANTOM5:849.8 Scaled Tags Per Million
Pig:497.3 nTPM
Allen mouse:18.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

854.5
Sample id Sample description nTPM
Area postrema
nTPM: 263.8
2054 Male, age 76, both hemispheres 341.7
2306 Male, age 80, both hemispheres 279.5
2799 Male, age 61, both hemispheres 170.1
Dorsal medullary reticular nucleus
nTPM: 603.2
2040 Female, age 85, both hemispheres 893.8
2373 Male, age 61, both hemispheres 501.4
2088 Male, age 76, both hemispheres 414.5
Dorsal motor vagal complex
nTPM: 379.5
2133 Female, age 91, both hemispheres 667.0
2000 Male, age 74, unknown 532.1
2844 Male, age 55, unknown 369.8
2813 Female, age 72, unknown 333.2
2185 Male, age 76, both hemispheres 314.2
2643 Male, age 74, both hemispheres 293.2
2807 Female, age 85, both hemispheres 272.5
2797 Male, age 61, both hemispheres 253.7
Gigantocellular reticular nuclei, medullary
nTPM: 707.5
2462 Male, age 74, both hemispheres 1101.7
1876 Female, age 85, both hemispheres 708.7
2310 Male, age 80, both hemispheres 707.3
2387 Female, age 91, both hemispheres 665.8
2022 Male, age 76, right hemisphere 539.0
2314 Male, age 61, both hemispheres 522.7
Gigantocellular reticular nuclei, pars
nTPM: 671.2
2168 Male, age 76, both hemispheres 1015.9
2084 Female, age 85, both hemispheres 621.8
2336 Male, age 61, both hemispheres 592.1
2330 Male, age 80, both hemispheres 582.1
2706 Male, age 80, both hemispheres 544.2
Inferior olive
nTPM: 409.3
2563 Male, age 74, both hemispheres 550.8
2628 Female, age 91, both hemispheres 434.9
2085 Female, age 85, both hemispheres 395.3
2178 Male, age 61, both hemispheres 388.6
2379 Male, age 80, both hemispheres 277.1
Lateral medullary reticular nucleus
nTPM: 622.5
2305 Male, age 74, both hemispheres 965.8
2044 Male, age 76, both hemispheres 965.4
2804 Female, age 91, both hemispheres 486.5
2190 Female, age 85, both hemispheres 478.7
2852 Male, age 80, both hemispheres 424.0
2374 Male, age 61, both hemispheres 414.7
Medial olivary nucleus
nTPM: 413.5
1962 Male, age 76, both hemispheres 426.0
2851 Male, age 80, both hemispheres 424.1
1943 Male, age 61, both hemispheres 421.5
2138 Female, age 91, both hemispheres 382.4
Medial vestibular nucleus
nTPM: 777.2
2801 Male, age 74, both hemispheres 937.0
2743 Female, age 85, both hemispheres 876.4
2093 Male, age 80, both hemispheres 797.5
2803 Female, age 91, both hemispheres 779.3
2624 Male, age 61, both hemispheres 640.1
2134 Male, age 76, both hemispheres 633.1
Motor hypoglossal nucleus
nTPM: 589.6
2125 Female, age 91, both hemispheres 879.9
2132 Female, age 85, both hemispheres 728.3
2461 Male, age 61, both hemispheres 560.7
2182 Male, age 80, both hemispheres 498.1
2277 Male, age 76, both hemispheres 280.8
Nucleus ambiguus
nTPM: 410.3
2096 Female, age 85, both hemispheres 449.1
2071 Male, age 76, both hemispheres 371.5
Nucleus cuneatus
nTPM: 477.6
2376 Male, age 61, both hemispheres 699.6
2131 Male, age 76, both hemispheres 673.8
2564 Male, age 74, both hemispheres 577.9
2100 Male, age 76, both hemispheres 563.4
2381 Male, age 80, both hemispheres 439.4
2562 Male, age 61, both hemispheres 389.7
2380 Male, age 80, both hemispheres 379.0
2808 Female, age 85, both hemispheres 335.8
2805 Female, age 91, both hemispheres 240.0
Nucleus gracilis
nTPM: 394.0
2627 Male, age 74, both hemispheres 563.3
2382 Male, age 80, both hemispheres 377.2
2299 Female, age 85, both hemispheres 241.6
Nucleus raphe obscurus
nTPM: 490.7
2800 Male, age 61, midline 621.1
2845 Female, age 85, midline 590.4
2142 Male, age 76, midline 260.7
Nucleus raphe pallidus
nTPM: 572.6
1924 Male, age 61, midline 719.5
2183 Male, age 80, midline 679.0
2145 Male, age 76, midline 319.2
Nucleus tractus solitarii
nTPM: 440.3
2144 Female, age 91, right hemisphere 793.3
2191 Female, age 85, both hemispheres 343.0
2656 Male, age 76, both hemispheres 338.0
2307 Male, age 80, both hemispheres 287.1
Parvicellular reticular nuclei
nTPM: 709.7
2558 Male, age 74, both hemispheres 839.4
2095 Male, age 76, both hemispheres 685.8
2119 Male, age 80, both hemispheres 603.9
Parvicellular reticular nuclei, medullary
nTPM: 626.5
2189 Female, age 91, both hemispheres 733.6
2091 Female, age 85, both hemispheres 655.2
2181 Male, age 80, left hemisphere 490.7
Peritrigeminal nucleus
nTPM: 854.5
2179 Male, age 61, both hemispheres 1068.1
2136 Male, age 76, both hemispheres 806.2
2067 Female, age 85, both hemispheres 689.2
Prepositus hypoglossal nucleus
nTPM: 723.5
2855 Female, age 85, right hemisphere 896.2
2086 Male, age 80, both hemispheres 550.7
Spinal trigeminal nucleus, caudal
nTPM: 616.8
2390 Female, age 91, both hemispheres 839.1
2447 Male, age 76, both hemispheres 699.3
2312 Male, age 61, both hemispheres 625.7
2642 Male, age 74, both hemispheres 477.3
2308 Male, age 80, both hemispheres 442.4
Spinal trigeminal nucleus, interpolar
nTPM: 851.0
2066 Male, age 76, right hemisphere 1275.5
2389 Female, age 91, both hemispheres 844.4
2625 Male, age 61, both hemispheres 765.0
2386 Female, age 85, both hemispheres 687.0
2033 Male, age 80, both hemispheres 683.2
Spinal vestibular nucleus
nTPM: 624.5
2186 Female, age 91, both hemispheres 749.7
2806 Female, age 85, both hemispheres 677.7
2780 Male, age 80, both hemispheres 638.9
2748 Male, age 76, both hemispheres 569.6
2796 Male, age 61, both hemispheres 559.5
2384 Male, age 74, both hemispheres 551.9
Superior vestibular nucleus
nTPM: 525.9
2015 Male, age 80, both hemispheres 601.4
2383 Male, age 74, both hemispheres 540.6
2061 Male, age 76, both hemispheres 435.8
Ventral medullary reticular nucleus
nTPM: 502.0
2372 Male, age 61, both hemispheres 520.0
2060 Male, age 76, both hemispheres 484.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 697.9
2741 Female, age 85, both hemispheres 897.5
1986 Male, age 76, both hemispheres 858.8
2180 Male, age 61, both hemispheres 670.7
2302 Female, age 91, both hemispheres 590.6
2118 Male, age 80, both hemispheres 471.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

849.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 849.8
FF:10038-101F2 18-64 years, mixed 964.0
FF:10174-103C3 60 years, female 921.0
FF:10155-103A2 76 years, female 664.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

497.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 497.3
Samples: 4

Max nTPM: 676.0
Min nTPM: 275.0
Sample A Female 676.0
Sample B Female 558.5
Sample C Male 479.7
Sample D Male 275.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 18.8
68546368 Antisense, RP_050120_02_D04, Mouse strain C57BL/6J (56 days, male) 20.2
70919203 Antisense, RP_050712_04_D08, Mouse strain C57BL/6J (56 days, male) 17.3

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