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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:330.5 nTPM
HPA Brain:531.7 nTPM
GTEx:330.5 nTPM
FANTOM5:634.4 Scaled Tags Per Million
Pig:269.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

531.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 477.3
1981 Female, age 72, midline 569.8
2194 Female, age 79, both hemispheres 555.8
2816 Male, age 47, midline 441.2
2048 Male, age 55, midline 410.6
2565 Male, age 75, midline 409.2
Cervical spinal cord, dorsal horn
nTPM: 531.7
2296 Male, age 66, both hemispheres 823.9
2173 Female, age 72, unknown 654.3
2069 Male, age 47, both hemispheres 551.8
2297 Male, age 75, both hemispheres 491.2
1877 Male, age 55, unknown 356.3
2721 Male, age 90, both hemispheres 312.5
Cervical spinal cord, ventral horn
nTPM: 456.3
2820 Female, age 79, both hemispheres 525.3
2068 Male, age 55, unknown 519.6
2480 Male, age 75, both hemispheres 506.1
2098 Female, age 72, unknown 459.0
2295 Male, age 66, both hemispheres 390.9
2809 Male, age 90, both hemispheres 337.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

330.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 330.5
Samples: 159

Max nTPM: 938.2
Min nTPM: 81.9
Std nTPM: 109.5
Median nTPM: 323.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 938.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 648.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 630.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 536.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 526.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 514.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 513.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 499.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 489.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 488.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 481.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 475.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 468.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 460.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 459.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 456.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 454.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 451.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 451.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 447.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 437.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 437.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 435.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 432.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 431.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 428.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 421.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 420.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 418.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 418.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 416.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 414.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 412.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 412.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 412.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 412.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 411.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 406.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 406.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 395.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 395.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 394.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 390.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 389.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 388.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 387.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 385.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 384.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 384.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 382.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 375.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 373.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 372.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 362.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 360.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 358.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 358.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 357.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 356.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 356.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 353.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 349.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 346.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 344.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 342.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 339.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 337.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 337.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 336.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 334.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 334.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 333.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 333.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 332.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 331.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 331.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 327.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 327.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 324.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 323.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 322.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 321.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 318.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 317.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 314.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 313.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 312.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 311.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 303.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 302.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 302.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 300.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 300.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 291.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 290.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 290.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 288.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 288.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 286.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 286.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 285.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 283.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 283.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 282.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 281.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 280.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 277.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 277.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 273.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 273.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 269.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 269.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 265.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 265.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 261.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 261.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 258.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 257.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 254.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 253.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 250.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 247.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 245.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 243.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 241.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 241.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 238.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 237.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 236.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 235.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 232.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 231.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 230.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 227.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 227.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 226.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 219.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 218.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 217.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 216.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 216.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 215.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 214.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 213.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 204.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 202.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 200.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 198.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 194.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 192.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 190.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 185.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 177.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 164.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 163.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 148.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 128.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 108.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 81.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

634.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 634.4
FF:10181-103D1 60 years, female 803.4
FF:10159-103A6 76 years, female 465.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 269.3
Samples: 4

Max nTPM: 446.8
Min nTPM: 122.9
Sample A Female 446.8
Sample B Female 164.3
Sample C Male 122.9
Sample D Male 343.2
Ventral spinal cord
nTPM: 261.6
Samples: 4

Max nTPM: 319.0
Min nTPM: 183.8
Sample A Female 319.0
Sample B Female 269.6
Sample C Male 273.8
Sample D Male 183.8

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