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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1334.3 nTPM
HPA Brain:366.5 nTPM
GTEx:1334.3 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:357.4 nTPM
Mouse:717.6 nTPM
Allen mouse:19.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

366.5
Sample id Sample description nTPM
Amygdala
nTPM: 366.5
2695 Female, age 67, right hemisphere 454.2
2514 Male, age 75, right hemisphere 408.1
1987 Female, age 91, left hemisphere 346.6
2517 Female, age 94, left hemisphere 335.9
2814 Male, age 76, right hemisphere 287.8
Basal amygdala
nTPM: 288.2
2827 Female, age 67, right hemisphere 384.9
2609 Male, age 75, right hemisphere 323.5
2110 Male, age 80, left hemisphere 301.6
2685 Female, age 94, left hemisphere 266.7
2243 Female, age 91, right hemisphere 227.9
1955 Male, age 76, both hemispheres 224.5
Central amygdala
nTPM: 341.2
2826 Female, age 94, left hemisphere 534.5
2515 Male, age 75, right hemisphere 415.5
2239 Male, age 80, left hemisphere 268.9
1905 Male, age 76, both hemispheres 256.5
2701 Female, age 91, right hemisphere 230.6
Corticomedial amygdala
nTPM: 284.0
2428 Male, age 75, right hemisphere 363.4
2535 Female, age 67, right hemisphere 287.6
2829 Male, age 80, left hemisphere 287.0
2240 Male, age 76, both hemispheres 256.4
2242 Female, age 91, right hemisphere 255.9
2429 Female, age 94, left hemisphere 253.6
Lateral amygdala
nTPM: 340.4
2830 Female, age 67, right hemisphere 471.2
2516 Male, age 75, right hemisphere 454.3
2534 Female, age 94, left hemisphere 378.6
2256 Male, age 80, left hemisphere 284.4
1883 Male, age 76, both hemispheres 238.0
2255 Female, age 91, right hemisphere 215.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1334.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1334.3
Samples: 152

Max nTPM: 5817.0
Min nTPM: 637.7
Std nTPM: 652.7
Median nTPM: 1187.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5817.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3935.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3869.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3036.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2832.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2745.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2683.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2660.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2548.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2375.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2280.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2250.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1990.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1989.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1945.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1891.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1837.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1810.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1797.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1793.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1788.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1772.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1753.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1672.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1662.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1631.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1625.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1577.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1560.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1554.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1538.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1509.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1503.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1495.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1492.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1483.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1482.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1458.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1448.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1408.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1406.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1393.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1392.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1384.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1374.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1365.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1359.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1351.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1348.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1340.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1325.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1317.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1315.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1314.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1299.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1284.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1283.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1280.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1278.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1275.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1272.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1268.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1264.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1258.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1258.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1258.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1256.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1248.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1232.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1224.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1208.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1208.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1197.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1196.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1193.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1189.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1186.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1185.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1184.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1182.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1181.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1177.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1172.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1162.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1159.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1158.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1151.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1140.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1137.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1127.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1124.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1119.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1105.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1096.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1086.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1079.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1069.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1063.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1048.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1047.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1046.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1036.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1030.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1015.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1014.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1013.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 999.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 998.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 996.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 994.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 984.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 977.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 977.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 967.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 965.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 961.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 958.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 944.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 944.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 942.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 939.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 936.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 927.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 920.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 913.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 897.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 894.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 887.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 884.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 875.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 868.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 868.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 857.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 851.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 846.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 839.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 834.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 833.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 787.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 761.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 760.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 759.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 756.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 734.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 732.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 716.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 713.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 691.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 685.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 676.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 673.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 637.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 24.0
FF:10151-102I7 76 years, female 24.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

357.4
Pig sample Sample description nTPM
Amygdala
nTPM: 357.4
Samples: 4

Max nTPM: 479.0
Min nTPM: 223.5
Sample A Female 394.8
Sample B Female 479.0
Sample C Male 332.2
Sample D Male 223.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

717.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 717.6
Samples: 4

Max nTPM: 742.4
Min nTPM: 691.6
Sample A Male 691.6
Sample B Male 730.5
Sample C Female 742.4
Sample D Female 705.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.8
68191186 Antisense, RP_041122_02_H09, Mouse strain C57BL/6J (56 days, male) 19.8

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