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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
377.6
nTPM
FANTOM5:
28.6
Scaled Tags Per Million
Pig:
520.7
nTPM
Allen mouse:
10.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
377.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 345.9
2090
Male, age 80, both hemispheres
399.2
2188
Female, age 91, both hemispheres
373.5
1984
Male, age 76, both hemispheres
321.7
2301
Female, age 85, both hemispheres
289.1
Dorsal cochlear nucleus nTPM: 347.2
2187
Female, age 91, both hemispheres
397.3
2802
Male, age 74, right hemisphere
391.0
2378
Male, age 80, both hemispheres
352.1
2370
Male, age 61, both hemispheres
309.9
2058
Male, age 76, both hemispheres
285.8
Dorsal tegmental nucleus nTPM: 333.2
2326
Male, age 74, both hemispheres
406.3
2083
Male, age 80, both hemispheres
368.9
1936
Male, age 76, left hemisphere
288.9
2358
Male, age 61, both hemispheres
268.6
Dorsolateral tegmental area nTPM: 346.9
2654
Male, age 80, both hemispheres
383.9
2360
Male, age 74, both hemispheres
364.5
2337
Male, age 61, both hemispheres
361.9
2751
Female, age 85, both hemispheres
346.3
2141
Male, age 76, both hemispheres
278.1
Kolliker-Fuse nucleus nTPM: 328.3
2315
Male, age 76, right hemisphere
395.4
2793
Female, age 91, left hemisphere
298.5
2163
Male, age 80, both hemispheres
290.8
Lateral lemniscal nuclei nTPM: 278.1
2746
Female, age 85, left hemisphere
320.6
2169
Male, age 76, both hemispheres
316.9
2453
Male, age 74, right hemisphere
266.2
2320
Female, age 91, left hemisphere
257.7
2036
Male, age 80, both hemispheres
229.2
Lateral parabrachial nucleus nTPM: 334.6
2792
Male, age 76, both hemispheres
380.6
2013
Male, age 80, both hemispheres
363.3
2139
Female, age 85, right hemisphere
355.3
2790
Male, age 61, both hemispheres
239.4
Lateral vestibular nucleus nTPM: 302.5
2311
Male, age 80, both hemispheres
359.8
2184
Male, age 76, both hemispheres
245.2
Locus coeruleus nTPM: 303.8
2720
Male, age 74, both hemispheres
329.6
2123
Female, age 91, both hemispheres
326.7
2788
Male, age 74, unknown
313.9
2162
Male, age 80, both hemispheres
312.2
2014
Male, age 55, unknown
303.8
2317
Female, age 72, unknown
299.8
1980
Male, age 76, both hemispheres
240.3
Medial parabrachial nucleus nTPM: 317.0
2170
Female, age 91, both hemispheres
411.9
2463
Female, age 85, right hemisphere
326.0
2854
Male, age 80, both hemispheres
321.3
2786
Male, age 76, both hemispheres
273.7
2156
Male, age 61, both hemispheres
252.0
Medial periolivary nuclei nTPM: 312.0
2063
Male, age 76, both hemispheres
381.8
2081
Male, age 80, both hemispheres
339.3
2791
Male, age 74, right hemisphere
289.6
2458
Female, age 91, both hemispheres
289.3
2171
Female, age 85, both hemispheres
259.8
Motor facial nucleus nTPM: 294.9
2062
Male, age 76, both hemispheres
372.1
2126
Male, age 61, both hemispheres
311.4
2365
Male, age 74, right hemisphere
306.4
2795
Female, age 91, both hemispheres
291.3
2697
Female, age 85, both hemispheres
271.4
2327
Male, age 80, both hemispheres
216.9
Motor trigeminal nucleus nTPM: 285.7
2321
Female, age 91, both hemispheres
306.0
2309
Male, age 76, both hemispheres
293.1
2335
Male, age 61, both hemispheres
282.0
2079
Male, age 80, both hemispheres
276.6
2560
Male, age 74, both hemispheres
271.0
Nuclei of the trapezoid body nTPM: 301.9
1983
Male, age 76, both hemispheres
428.2
2159
Male, age 61, both hemispheres
284.7
2166
Male, age 80, both hemispheres
273.3
2735
Female, age 85, both hemispheres
264.7
2368
Female, age 91, both hemispheres
258.4
Nucleus raphe magnus nTPM: 270.8
2459
Female, age 91, both hemispheres
292.1
2455
Male, age 74, both hemispheres
287.0
2160
Male, age 61, both hemispheres
276.0
2051
Male, age 76, both hemispheres
269.9
2328
Male, age 80, both hemispheres
256.3
2172
Female, age 85, both hemispheres
243.5
Paramedian reticular nucleus nTPM: 306.1
2057
Male, age 80, both hemispheres
325.1
2313
Male, age 61, both hemispheres
305.1
2052
Male, age 76, both hemispheres
301.1
2050
Female, age 85, both hemispheres
293.0
Pedunculopontine tegmental nucleus nTPM: 329.0
2338
Male, age 61, both hemispheres
370.1
2334
Male, age 80, both hemispheres
351.1
1921
Female, age 85, both hemispheres
265.7
Pontine nuclei nTPM: 317.5
2319
Female, age 91, both hemispheres
352.3
1968
Male, age 76, left hemisphere
340.3
1863
Male, age 55, unknown
327.7
2109
Female, age 72, unknown
318.5
2115
Male, age 80, left hemisphere
307.0
2727
Male, age 61, right hemisphere
305.2
2454
Male, age 74, left hemisphere
297.1
2787
Female, age 85, both hemispheres
292.1
Pontine raphe nucleus nTPM: 309.5
2122
Female, age 85, midline
342.0
2853
Male, age 76, midline
277.1
Posteroventral cochlear nucleus nTPM: 377.6
2341
Male, age 80, both hemispheres
451.0
2135
Female, age 91, both hemispheres
422.8
2371
Male, age 61, both hemispheres
379.6
2752
Female, age 85, both hemispheres
342.2
2070
Male, age 76, both hemispheres
292.3
Principal sensory trigeminal nucleus nTPM: 268.9
2158
Male, age 61, both hemispheres
297.0
2367
Female, age 91, left hemisphere
288.8
2324
Male, age 76, both hemispheres
245.3
2008
Male, age 80, left hemisphere
244.3
Reticular pontine nucleus, caudal nTPM: 307.5
2092
Male, age 76, both hemispheres
373.0
2559
Male, age 74, both hemispheres
326.1
2457
Female, age 91, both hemispheres
325.4
2332
Male, age 80, right hemisphere
205.4
Reticular pontine nucleus, oral nTPM: 310.1
1939
Male, age 80, both hemispheres
332.3
2366
Female, age 91, both hemispheres
317.2
2167
Male, age 76, both hemispheres
312.1
2361
Male, age 74, both hemispheres
307.5
2012
Female, age 85, both hemispheres
281.4
Reticulotegmental nucleus nTPM: 313.0
2452
Male, age 74, both hemispheres
361.1
2322
Female, age 91, both hemispheres
314.1
2325
Male, age 76, both hemispheres
288.5
2333
Male, age 80, both hemispheres
288.4
Spinal trigeminal nucleus, oral nTPM: 280.5
1978
Male, age 76, both hemispheres
283.6
2737
Female, age 85, both hemispheres
279.1
2164
Male, age 80, both hemispheres
278.9
Subcoeruleus area nTPM: 322.2
2451
Male, age 74, both hemispheres
404.9
2369
Female, age 85, left hemisphere
353.6
1958
Male, age 80, both hemispheres
301.7
2323
Female, age 91, left hemisphere
276.2
2089
Male, age 76, left hemisphere
274.5
Superior olive nTPM: 288.7
2020
Male, age 76, both hemispheres
345.8
2364
Male, age 74, right hemisphere
302.4
1875
Female, age 85, both hemispheres
280.4
2561
Female, age 91, both hemispheres
266.3
2329
Male, age 80, right hemisphere
248.6
Ventral periolivary nuclei nTPM: 283.0
2023
Male, age 76, both hemispheres
339.0
2165
Male, age 80, both hemispheres
285.6
2794
Female, age 91, left hemisphere
272.4
2130
Female, age 85, both hemispheres
235.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 292.3
2161
Male, age 80, both hemispheres
308.0
1959
Male, age 76, both hemispheres
298.1
2456
Female, age 91, both hemispheres
298.1
2359
Male, age 61, both hemispheres
292.0
2840
Female, age 85, both hemispheres
285.9
2449
Male, age 74, both hemispheres
272.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
520.7
Pig sample
Sample description
nTPM
Pons nTPM: 520.7
Samples: 4
Max nTPM: 690.2
Min nTPM: 382.3
Sample A
Female
517.9
Sample B
Female
382.3
Sample C
Male
690.2
Sample D
Male
492.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
