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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:835.4 nTPM
GTEx:835.4 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:172.1 nTPM
Mouse:1123.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

835.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 835.4
Samples: 105

Max nTPM: 1447.5
Min nTPM: 506.8
Std nTPM: 156.4
Median nTPM:
491_1 89 years, female 1447.5
495_1 57 years, female 1202.1
35_1 74 years, female 1155.3
490_1 67 years, female 1120.0
389_1 86 years, female 1073.0
415_1 77 years, female 1070.0
466_1 57 years, female 1056.9
315_1 62 years, female 1045.7
307_1 66 years, female 1042.4
162_1 79 years, female 1036.1
321_1 62 years, female 1018.9
413_1 59 years, female 1017.2
379_1 60 years, male 1017.0
153_1 70 years, female 1010.7
396_1 62 years, male 1003.9
414_1 84 years, female 1002.6
246_1 77 years, male 997.6
120_1 70 years, female 987.7
139_1 64 years, female 986.1
119_1 70 years, female 985.4
126_1 63 years, male 980.9
308_1 70 years, female 977.2
145_1 84 years, male 975.9
17_1 71 years, male 970.0
526_1 61 years, male 964.1
384_1 83 years, male 961.2
217_1 76 years, male 956.9
89_1 63 years, male 953.5
375_1 74 years, female 950.3
501_1 88 years, male 926.4
237_1 82 years, male 918.4
137_1 83 years, male 916.7
311_1 78 years, male 916.2
42_1 85 years, male 910.3
142_1 61 years, female 907.8
386_1 76 years, male 890.2
4_1 88 years, female 883.1
32_1 67 years, male 882.1
347_1 72 years, male 881.3
117_1 61 years, male 878.4
447_1 81 years, male 865.0
322_1 76 years, male 857.1
499_1 55 years, female 856.0
189_1 76 years, male 854.0
265_1 87 years, male 852.4
6_1 73 years, female 843.0
324_1 76 years, male 835.7
518_1 75 years, female 834.0
313_1 79 years, female 832.0
173_1 67 years, male 831.2
452_1 88 years, female 829.4
149_1 88 years, male 829.3
218_1 71 years, female 825.2
377_1 82 years, female 824.0
2_1 77 years, female 814.9
229_1 69 years, female 814.4
18_1 88 years, male 810.5
468_1 89 years, male 809.8
314_1 67 years, male 807.0
109_1 81 years, female 806.4
266_1 85 years, male 801.3
376_1 75 years, female 795.2
81_1 67 years, male 786.3
43_1 64 years, female 783.5
320_1 89 years, female 782.0
355_1 70 years, female 775.7
288_1 66 years, female 771.6
394_1 75 years, female 759.7
115_1 83 years, male 757.1
254_1 77 years, female 753.7
41_1 94 years, female 748.9
348_1 84 years, male 743.1
317_1 60 years, male 726.5
405_1 91 years, male 726.1
349_1 83 years, male 720.9
243_1 75 years, male 720.3
480_1 63 years, male 719.3
99_1 64 years, male 716.5
291_1 76 years, male 705.2
9_1 66 years, female 702.3
251_1 78 years, male 699.3
351_1 91 years, male 698.1
295_1 61 years, female 697.0
335_1 73 years, female 696.7
503_1 68 years, male 694.3
404_1 82 years, female 693.8
316_1 62 years, male 690.4
353_1 82 years, female 682.1
177_1 74 years, male 676.4
517_1 88 years, male 671.8
352_1 62 years, male 669.4
286_1 68 years, female 668.1
354_1 81 years, female 664.1
319_1 81 years, male 658.4
172_1 72 years, female 653.4
264_1 73 years, female 652.9
506_1 65 years, male 637.1
292_1 71 years, male 622.9
350_1 84 years, female 620.0
425_1 59 years, female 600.7
406_1 79 years, male 599.1
318_1 68 years, male 596.8
293_1 68 years, female 581.0
356_1 87 years, female 579.6
163_1 78 years, male 506.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 29.0
FF:10030-101E3 24-65 years, mixed 29.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.1
Pig sample Sample description nTPM
Retina
nTPM: 172.1
Samples: 4

Max nTPM: 183.7
Min nTPM: 162.8
Sample A Female 165.1
Sample B Female 176.6
Sample C Male 183.7
Sample D Male 162.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1123.9
Mouse sample Sample description nTPM
Retina
nTPM: 1123.9
Samples: 4

Max nTPM: 1206.0
Min nTPM: 964.2
Sample A Male 1204.4
Sample B Male 964.2
Sample C Female 1206.0
Sample D Female 1121.0

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