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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:491.6 nTPM
HPA Brain:166.3 nTPM
GTEx:491.6 nTPM
FANTOM5:209.9 Scaled Tags Per Million
Pig:391.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.3
Sample id Sample description nTPM
Amygdala
nTPM: 164.0
2695 Female, age 67, right hemisphere 199.6
2514 Male, age 75, right hemisphere 162.3
2814 Male, age 76, right hemisphere 157.9
2517 Female, age 94, left hemisphere 156.9
1987 Female, age 91, left hemisphere 143.5
Basal amygdala
nTPM: 156.8
2827 Female, age 67, right hemisphere 216.0
2685 Female, age 94, left hemisphere 160.6
2609 Male, age 75, right hemisphere 158.7
2243 Female, age 91, right hemisphere 138.8
2110 Male, age 80, left hemisphere 133.9
1955 Male, age 76, both hemispheres 133.1
Central amygdala
nTPM: 152.6
2826 Female, age 94, left hemisphere 222.6
2515 Male, age 75, right hemisphere 145.6
2239 Male, age 80, left hemisphere 140.6
2701 Female, age 91, right hemisphere 130.2
1905 Male, age 76, both hemispheres 123.8
Corticomedial amygdala
nTPM: 145.9
2535 Female, age 67, right hemisphere 154.5
2428 Male, age 75, right hemisphere 153.3
2242 Female, age 91, right hemisphere 149.2
2829 Male, age 80, left hemisphere 141.1
2429 Female, age 94, left hemisphere 139.5
2240 Male, age 76, both hemispheres 137.8
Lateral amygdala
nTPM: 166.3
2830 Female, age 67, right hemisphere 246.4
2516 Male, age 75, right hemisphere 173.1
2534 Female, age 94, left hemisphere 160.7
2256 Male, age 80, left hemisphere 150.7
2255 Female, age 91, right hemisphere 140.1
1883 Male, age 76, both hemispheres 126.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

491.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 491.6
Samples: 152

Max nTPM: 1222.5
Min nTPM: 254.0
Std nTPM: 177.1
Median nTPM: 445.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1222.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1161.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1035.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1008.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 988.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 945.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 920.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 904.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 896.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 871.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 821.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 809.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 799.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 752.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 745.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 742.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 704.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 690.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 678.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 640.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 633.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 630.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 629.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 620.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 617.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 605.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 598.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 587.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 587.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 580.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 577.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 576.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 573.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 566.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 557.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 557.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 549.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 544.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 534.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 530.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 529.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 526.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 522.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 521.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 518.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 512.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 508.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 505.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 503.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 502.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 499.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 494.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 494.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 494.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 493.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 491.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 488.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 487.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 484.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 477.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 476.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 474.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 470.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 469.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 469.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 466.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 465.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 462.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 458.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 455.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 455.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 454.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 453.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 451.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 447.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 445.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 445.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 443.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 441.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 435.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 433.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 432.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 431.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 430.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 429.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 428.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 428.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 422.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 419.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 419.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 418.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 417.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 415.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 412.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 410.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 409.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 406.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 406.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 404.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 403.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 403.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 402.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 402.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 401.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 400.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 400.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 399.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 398.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 395.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 395.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 394.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 392.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 391.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 390.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 387.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 380.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 368.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 364.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 364.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 361.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 358.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 354.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 353.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 353.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 350.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 349.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 348.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 345.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 344.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 344.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 340.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 340.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 340.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 338.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 337.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 337.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 334.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 332.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 330.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 329.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 326.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 326.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 318.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 311.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 297.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 291.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 287.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 281.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 279.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 269.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 254.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 254.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

209.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 209.9
FF:10151-102I7 76 years, female 209.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

391.8
Pig sample Sample description nTPM
Amygdala
nTPM: 391.8
Samples: 4

Max nTPM: 517.1
Min nTPM: 254.2
Sample A Female 517.1
Sample B Female 414.6
Sample C Male 381.3
Sample D Male 254.2

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