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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:341.6 nTPM
GTEx:341.6 nTPM
FANTOM5:305.3 Scaled Tags Per Million
Pig:247.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 341.6
Samples: 105

Max nTPM: 495.7
Min nTPM: 159.8
Std nTPM: 65.1
Median nTPM:
35_1 74 years, female 495.7
389_1 86 years, female 477.6
237_1 82 years, male 473.6
386_1 76 years, male 465.3
384_1 83 years, male 462.9
41_1 94 years, female 449.4
153_1 70 years, female 447.7
321_1 62 years, female 438.7
375_1 74 years, female 438.6
246_1 77 years, male 435.5
526_1 61 years, male 430.9
379_1 60 years, male 426.6
396_1 62 years, male 424.3
189_1 76 years, male 422.0
120_1 70 years, female 420.2
355_1 70 years, female 415.4
6_1 73 years, female 414.8
145_1 84 years, male 412.3
447_1 81 years, male 407.9
307_1 66 years, female 404.7
320_1 89 years, female 401.7
229_1 69 years, female 400.1
17_1 71 years, male 399.6
2_1 77 years, female 387.1
42_1 85 years, male 386.8
18_1 88 years, male 379.0
137_1 83 years, male 378.7
217_1 76 years, male 373.0
251_1 78 years, male 372.3
126_1 63 years, male 371.8
335_1 73 years, female 371.2
4_1 88 years, female 369.5
376_1 75 years, female 367.7
311_1 78 years, male 362.8
405_1 91 years, male 359.8
377_1 82 years, female 358.5
347_1 72 years, male 356.9
243_1 75 years, male 355.6
81_1 67 years, male 352.9
351_1 91 years, male 351.4
322_1 76 years, male 349.4
316_1 62 years, male 349.2
317_1 60 years, male 347.9
480_1 63 years, male 345.9
173_1 67 years, male 344.5
319_1 81 years, male 343.5
468_1 89 years, male 343.3
350_1 84 years, female 343.1
288_1 66 years, female 343.0
218_1 71 years, female 342.8
117_1 61 years, male 341.3
99_1 64 years, male 341.2
348_1 84 years, male 340.4
354_1 81 years, female 338.1
265_1 87 years, male 337.9
452_1 88 years, female 335.9
115_1 83 years, male 334.3
139_1 64 years, female 334.2
404_1 82 years, female 333.3
315_1 62 years, female 333.2
394_1 75 years, female 331.5
295_1 61 years, female 329.3
314_1 67 years, male 329.0
264_1 73 years, female 328.9
518_1 75 years, female 323.0
177_1 74 years, male 319.3
142_1 61 years, female 317.8
353_1 82 years, female 317.4
324_1 76 years, male 316.8
254_1 77 years, female 314.2
503_1 68 years, male 313.8
32_1 67 years, male 311.8
291_1 76 years, male 310.7
318_1 68 years, male 309.9
349_1 83 years, male 309.9
9_1 66 years, female 309.7
506_1 65 years, male 308.1
109_1 81 years, female 307.9
266_1 85 years, male 307.1
313_1 79 years, female 304.8
499_1 55 years, female 304.1
162_1 79 years, female 303.8
352_1 62 years, male 299.8
308_1 70 years, female 299.6
292_1 71 years, male 298.4
172_1 72 years, female 296.7
286_1 68 years, female 287.7
119_1 70 years, female 286.6
495_1 57 years, female 286.3
425_1 59 years, female 280.7
415_1 77 years, female 278.0
356_1 87 years, female 275.4
406_1 79 years, male 275.3
163_1 78 years, male 272.9
517_1 88 years, male 271.6
293_1 68 years, female 271.1
466_1 57 years, female 261.7
43_1 64 years, female 248.1
414_1 84 years, female 230.5
89_1 63 years, male 223.1
501_1 88 years, male 218.0
149_1 88 years, male 216.5
491_1 89 years, female 199.8
413_1 59 years, female 162.8
490_1 67 years, female 159.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

305.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 305.3
FF:10030-101E3 24-65 years, mixed 305.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.9
Pig sample Sample description nTPM
Retina
nTPM: 248.0
Samples: 4

Max nTPM: 294.0
Min nTPM: 215.0
Sample A Female 224.6
Sample B Female 258.3
Sample C Male 294.0
Sample D Male 215.0

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