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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1252.3 nTPM
FANTOM5:795.7 Scaled Tags Per Million
Pig:753.3 nTPM
Allen mouse:19.7 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1252.3
Sample id Sample description nTPM
Area postrema
nTPM: 768.0
2799 Male, age 61, both hemispheres 973.9
2054 Male, age 76, both hemispheres 796.6
2306 Male, age 80, both hemispheres 533.6
Dorsal medullary reticular nucleus
nTPM: 922.6
2040 Female, age 85, both hemispheres 1261.4
2088 Male, age 76, both hemispheres 763.4
2373 Male, age 61, both hemispheres 743.1
Dorsal motor vagal complex
nTPM: 901.8
2000 Male, age 74, unknown 1154.6
2133 Female, age 91, both hemispheres 1123.7
2844 Male, age 55, unknown 1105.2
2797 Male, age 61, both hemispheres 967.2
2813 Female, age 72, unknown 899.5
2643 Male, age 74, both hemispheres 745.4
2185 Male, age 76, both hemispheres 740.5
2807 Female, age 85, both hemispheres 478.0
Gigantocellular reticular nuclei, medullary
nTPM: 879.9
2462 Male, age 74, both hemispheres 1236.8
1876 Female, age 85, both hemispheres 929.0
2310 Male, age 80, both hemispheres 911.4
2314 Male, age 61, both hemispheres 762.1
2022 Male, age 76, right hemisphere 736.3
2387 Female, age 91, both hemispheres 703.6
Gigantocellular reticular nuclei, pars
nTPM: 1021.4
2168 Male, age 76, both hemispheres 1463.1
2084 Female, age 85, both hemispheres 1053.9
2336 Male, age 61, both hemispheres 929.6
2706 Male, age 80, both hemispheres 834.7
2330 Male, age 80, both hemispheres 825.8
Inferior olive
nTPM: 803.4
2563 Male, age 74, both hemispheres 1091.9
2085 Female, age 85, both hemispheres 871.5
2628 Female, age 91, both hemispheres 828.8
2178 Male, age 61, both hemispheres 641.9
2379 Male, age 80, both hemispheres 582.8
Lateral medullary reticular nucleus
nTPM: 902.1
2044 Male, age 76, both hemispheres 1276.5
2305 Male, age 74, both hemispheres 945.8
2804 Female, age 91, both hemispheres 912.5
2190 Female, age 85, both hemispheres 798.3
2852 Male, age 80, both hemispheres 753.4
2374 Male, age 61, both hemispheres 726.2
Medial olivary nucleus
nTPM: 702.6
2138 Female, age 91, both hemispheres 862.7
2851 Male, age 80, both hemispheres 730.2
1962 Male, age 76, both hemispheres 688.6
1943 Male, age 61, both hemispheres 529.1
Medial vestibular nucleus
nTPM: 1121.5
2624 Male, age 61, both hemispheres 1224.7
2134 Male, age 76, both hemispheres 1223.8
2801 Male, age 74, both hemispheres 1159.4
2743 Female, age 85, both hemispheres 1091.5
2093 Male, age 80, both hemispheres 1035.0
2803 Female, age 91, both hemispheres 994.8
Motor hypoglossal nucleus
nTPM: 980.3
2125 Female, age 91, both hemispheres 1161.5
2461 Male, age 61, both hemispheres 1051.5
2132 Female, age 85, both hemispheres 1016.6
2182 Male, age 80, both hemispheres 894.4
2277 Male, age 76, both hemispheres 777.2
Nucleus ambiguus
nTPM: 1008.0
2096 Female, age 85, both hemispheres 1276.9
2071 Male, age 76, both hemispheres 739.0
Nucleus cuneatus
nTPM: 777.0
2131 Male, age 76, both hemispheres 1081.3
2564 Male, age 74, both hemispheres 1025.9
2562 Male, age 61, both hemispheres 954.9
2100 Male, age 76, both hemispheres 893.2
2376 Male, age 61, both hemispheres 826.6
2381 Male, age 80, both hemispheres 590.0
2805 Female, age 91, both hemispheres 581.3
2380 Male, age 80, both hemispheres 521.7
2808 Female, age 85, both hemispheres 518.0
Nucleus gracilis
nTPM: 635.7
2627 Male, age 74, both hemispheres 996.3
2382 Male, age 80, both hemispheres 487.2
2299 Female, age 85, both hemispheres 423.7
Nucleus raphe obscurus
nTPM: 741.0
2800 Male, age 61, midline 865.3
2845 Female, age 85, midline 783.0
2142 Male, age 76, midline 574.6
Nucleus raphe pallidus
nTPM: 881.7
2183 Male, age 80, midline 1138.6
1924 Male, age 61, midline 961.2
2145 Male, age 76, midline 545.4
Nucleus tractus solitarii
nTPM: 760.6
2656 Male, age 76, both hemispheres 890.2
2144 Female, age 91, right hemisphere 820.1
2191 Female, age 85, both hemispheres 680.9
2307 Male, age 80, both hemispheres 651.3
Parvicellular reticular nuclei
nTPM: 969.2
2119 Male, age 80, both hemispheres 1064.8
2095 Male, age 76, both hemispheres 970.4
2558 Male, age 74, both hemispheres 872.3
Parvicellular reticular nuclei, medullary
nTPM: 1034.9
2189 Female, age 91, both hemispheres 1174.4
2091 Female, age 85, both hemispheres 1011.3
2181 Male, age 80, left hemisphere 918.9
Peritrigeminal nucleus
nTPM: 1120.6
2179 Male, age 61, both hemispheres 1159.1
2067 Female, age 85, both hemispheres 1105.1
2136 Male, age 76, both hemispheres 1097.5
Prepositus hypoglossal nucleus
nTPM: 987.3
2855 Female, age 85, right hemisphere 1044.4
2086 Male, age 80, both hemispheres 930.2
Spinal trigeminal nucleus, caudal
nTPM: 922.7
2390 Female, age 91, both hemispheres 1285.3
2447 Male, age 76, both hemispheres 1066.6
2642 Male, age 74, both hemispheres 803.7
2308 Male, age 80, both hemispheres 742.3
2312 Male, age 61, both hemispheres 715.8
Spinal trigeminal nucleus, interpolar
nTPM: 1252.3
2625 Male, age 61, both hemispheres 1709.6
2066 Male, age 76, right hemisphere 1573.3
2033 Male, age 80, both hemispheres 1080.2
2389 Female, age 91, both hemispheres 1007.7
2386 Female, age 85, both hemispheres 890.5
Spinal vestibular nucleus
nTPM: 945.5
2780 Male, age 80, both hemispheres 1076.5
2186 Female, age 91, both hemispheres 1062.8
2796 Male, age 61, both hemispheres 956.1
2748 Male, age 76, both hemispheres 898.9
2806 Female, age 85, both hemispheres 898.3
2384 Male, age 74, both hemispheres 780.5
Superior vestibular nucleus
nTPM: 952.8
2383 Male, age 74, both hemispheres 1020.2
2015 Male, age 80, both hemispheres 931.8
2061 Male, age 76, both hemispheres 906.3
Ventral medullary reticular nucleus
nTPM: 813.5
2060 Male, age 76, both hemispheres 887.5
2372 Male, age 61, both hemispheres 739.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 946.6
1986 Male, age 76, both hemispheres 1143.0
2741 Female, age 85, both hemispheres 1120.8
2302 Female, age 91, both hemispheres 914.3
2180 Male, age 61, both hemispheres 895.7
2118 Male, age 80, both hemispheres 659.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

795.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 795.7
FF:10038-101F2 18-64 years, mixed 873.3
FF:10155-103A2 76 years, female 789.6
FF:10174-103C3 60 years, female 724.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

753.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 753.3
Samples: 4

Max nTPM: 869.5
Min nTPM: 663.9
Sample A Female 663.9
Sample B Female 766.1
Sample C Male 869.5
Sample D Male 713.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.7
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 19.7
77620804 Antisense, RP_070129_03_H04, Mouse strain C57BL/6J (56 days, male) 19.7

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