MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:534.4 nTPM
HPA Brain:1180.6 nTPM
GTEx:534.4 nTPM
FANTOM5:681.7 Scaled Tags Per Million
Pig:845.7 nTPM
Mouse:1497.8 nTPM
Allen mouse:24.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1180.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 955.3
2586 Male, age 75, left hemisphere 1352.6
1827 Male, age 72, unknown 1158.5
2828 Female, age 72, unknown 1015.3
2411 Female, age 72, unknown 988.9
2019 Male, age 18, unknown 953.7
2666 Male, age 74, left hemisphere 927.1
1870 Female, age 42, unknown 834.0
2219 Male, age 76, both hemispheres 818.1
1833 Male, age 53, unknown 779.5
1830 Male, age 51, unknown 725.4
Dorsal raphe nucleus
nTPM: 1013.9
2298 Female, age 72, unknown 1289.0
2047 Male, age 72, unknown 1095.2
1828 Male, age 53, unknown 1031.4
2750 Male, age 76, both hemispheres 900.8
2016 Female, age 72, unknown 753.3
Inferior colliculus
nTPM: 870.3
2097 Female, age 72, unknown 1019.6
1848 Female, age 42, unknown 864.4
1890 Male, age 53, unknown 810.7
2849 Male, age 72, unknown 786.4
Median raphe nucleus
nTPM: 1019.6
2220 Male, age 76, midline 1019.6
Periaquaductal grey, anterior
nTPM: 1004.6
1947 Male, age 18, unknown 1091.7
1795 Male, age 51, unknown 1084.7
2502 Female, age 75, unknown 837.3
Periaquaductal grey, dorsal
nTPM: 764.7
1840 Male, age 53, unknown 860.0
1831 Male, age 72, unknown 803.1
2850 Male, age 76, both hemispheres 702.7
2464 Female, age 72, unknown 693.1
Periaquaductal grey, lateral
nTPM: 770.6
2272 Male, age 74, both hemispheres 886.2
2053 Male, age 18, unknown 773.9
2140 Male, age 76, both hemispheres 651.7
Pretectal area
nTPM: 1039.2
1816 Male, age 51, unknown 1392.6
2007 Male, age 72, unknown 1266.6
1944 Female, age 72, unknown 1264.5
1817 Female, age 42, unknown 1203.5
2667 Female, age 75, unknown 1175.5
1815 Male, age 53, unknown 1020.9
2224 Female, age 72, unknown 940.1
2273 Male, age 74, both hemispheres 930.9
2825 Male, age 18, unknown 824.6
2407 Male, age 75, both hemispheres 807.1
2316 Male, age 76, right hemisphere 605.3
Red nucleus
nTPM: 841.9
1821 Female, age 72, unknown 1018.2
2584 Male, age 75, left hemisphere 937.3
2785 Male, age 18, unknown 927.3
2725 Female, age 75, unknown 922.3
1954 Female, age 42, unknown 844.1
2503 Female, age 72, unknown 834.6
2769 Male, age 72, unknown 823.9
2227 Male, age 72, unknown 796.5
1865 Male, age 51, unknown 776.1
1904 Male, age 53, unknown 773.8
2588 Male, age 74, left hemisphere 760.1
2823 Male, age 76, right hemisphere 688.3
Substantia nigra
nTPM: 1180.6
1916 Female, age 42, unknown 1736.8
1941 Male, age 53, unknown 1414.7
1851 Male, age 51, unknown 1348.7
1889 Female, age 72, unknown 1251.7
2665 Male, age 74, both hemispheres 1101.5
2241 Male, age 72, unknown 1058.5
2583 Male, age 75, right hemisphere 1056.6
2409 Female, age 72, unknown 1017.5
2699 Male, age 18, unknown 976.7
2590 Female, age 75, unknown 843.0
Superior colliculus
nTPM: 920.6
2087 Female, age 72, unknown 1152.5
2668 Female, age 75, unknown 1150.2
1796 Male, age 53, unknown 1110.9
2261 Male, age 18, unknown 1051.0
2664 Male, age 75, both hemispheres 1029.1
2587 Male, age 74, left hemisphere 820.5
1839 Male, age 51, unknown 789.6
1895 Male, age 76, right hemisphere 754.8
1913 Female, age 42, unknown 700.0
1995 Male, age 72, unknown 647.9
Ventral tegmental area
nTPM: 1073.4
1915 Female, age 42, unknown 1291.7
2410 Female, age 72, unknown 1254.3
2218 Male, age 76, both hemispheres 1152.0
1942 Male, age 51, unknown 967.7
2223 Female, age 72, unknown 943.9
2021 Male, age 53, unknown 830.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 534.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 534.4
Samples: 139

Max nTPM: 1481.0
Min nTPM: 230.4
Std nTPM: 177.7
Median nTPM: 493.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1481.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1092.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1011.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 868.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 837.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 823.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 819.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 803.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 803.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 797.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 796.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 681.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 681.7
FF:10158-103A5 76 years, female 681.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 845.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 712.5
Samples: 4

Max nTPM: 903.2
Min nTPM: 561.3
Sample A Female 903.2
Sample B Female 577.8
Sample C Male 807.5
Sample D Male 561.3
Midbrain
nTPM: 764.7
Samples: 4

Max nTPM: 910.9
Min nTPM: 647.9
Sample A Female 776.8
Sample B Female 647.9
Sample C Male 910.9
Sample D Male 723.3
Periaqueductal gray
nTPM: 613.1
Samples: 3

Max nTPM: 719.3
Min nTPM: 532.7
Sample B Female 587.4
Sample C Male 719.3
Sample D Male 532.7
Superior colliculi
nTPM: 845.7
Samples: 4

Max nTPM: 1009.3
Min nTPM: 689.4
Sample A Female 915.5
Sample B Female 689.4
Sample C Male 1009.3
Sample D Male 768.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1497.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1497.8
Samples: 4

Max nTPM: 1632.2
Min nTPM: 1412.7
Sample A Male 1632.2
Sample B Male 1438.4
Sample C Female 1412.7
Sample D Female 1507.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 24.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.6
77620804 Antisense, RP_070129_03_H04, Mouse strain C57BL/6J (56 days, male) 24.6

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