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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:450.7 nTPM
GTEx:450.7 nTPM
FANTOM5:833.2 Scaled Tags Per Million
Pig:583.5 nTPM
Mouse:3942.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

450.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 450.7
Samples: 105

Max nTPM: 1318.6
Min nTPM: 89.5
Std nTPM: 219.3
Median nTPM:
218_1 71 years, female 1318.6
386_1 76 years, male 972.1
353_1 82 years, female 954.1
452_1 88 years, female 892.7
351_1 91 years, male 810.5
322_1 76 years, male 802.2
379_1 60 years, male 764.9
173_1 67 years, male 764.7
354_1 81 years, female 745.5
295_1 61 years, female 742.9
319_1 81 years, male 726.1
506_1 65 years, male 723.3
350_1 84 years, female 714.0
377_1 82 years, female 708.8
163_1 78 years, male 707.9
6_1 73 years, female 693.4
318_1 68 years, male 688.6
447_1 81 years, male 688.1
321_1 62 years, female 659.1
41_1 94 years, female 655.7
320_1 89 years, female 655.7
384_1 83 years, male 628.6
243_1 75 years, male 615.4
356_1 87 years, female 597.8
237_1 82 years, male 594.6
317_1 60 years, male 586.9
316_1 62 years, male 584.7
375_1 74 years, female 583.1
347_1 72 years, male 569.2
293_1 68 years, female 554.7
348_1 84 years, male 553.9
145_1 84 years, male 549.7
355_1 70 years, female 544.1
352_1 62 years, male 542.9
307_1 66 years, female 537.7
349_1 83 years, male 536.0
291_1 76 years, male 530.0
4_1 88 years, female 528.6
376_1 75 years, female 523.2
2_1 77 years, female 510.3
177_1 74 years, male 498.3
17_1 71 years, male 494.3
335_1 73 years, female 487.8
264_1 73 years, female 465.5
172_1 72 years, female 451.3
311_1 78 years, male 448.7
120_1 70 years, female 447.3
292_1 71 years, male 446.3
35_1 74 years, female 434.5
404_1 82 years, female 432.1
425_1 59 years, female 430.1
18_1 88 years, male 415.3
308_1 70 years, female 409.5
503_1 68 years, male 403.5
518_1 75 years, female 403.1
137_1 83 years, male 401.8
99_1 64 years, male 392.5
405_1 91 years, male 391.7
251_1 78 years, male 391.3
406_1 79 years, male 387.3
288_1 66 years, female 387.0
389_1 86 years, female 382.1
189_1 76 years, male 367.4
254_1 77 years, female 362.0
394_1 75 years, female 356.9
526_1 61 years, male 355.5
286_1 68 years, female 352.7
517_1 88 years, male 350.3
396_1 62 years, male 347.7
153_1 70 years, female 343.4
314_1 67 years, male 337.7
115_1 83 years, male 335.4
265_1 87 years, male 334.2
139_1 64 years, female 330.8
42_1 85 years, male 320.1
246_1 77 years, male 313.9
480_1 63 years, male 311.4
315_1 62 years, female 306.6
117_1 61 years, male 301.5
495_1 57 years, female 284.6
229_1 69 years, female 280.3
324_1 76 years, male 275.3
81_1 67 years, male 274.7
109_1 81 years, female 265.1
468_1 89 years, male 264.1
126_1 63 years, male 252.8
313_1 79 years, female 251.3
266_1 85 years, male 248.3
119_1 70 years, female 244.3
43_1 64 years, female 232.8
217_1 76 years, male 229.7
142_1 61 years, female 219.2
9_1 66 years, female 218.3
499_1 55 years, female 209.1
89_1 63 years, male 183.5
501_1 88 years, male 179.1
162_1 79 years, female 160.4
32_1 67 years, male 124.0
466_1 57 years, female 119.4
414_1 84 years, female 116.3
415_1 77 years, female 116.3
490_1 67 years, female 105.8
491_1 89 years, female 98.6
149_1 88 years, male 94.7
413_1 59 years, female 89.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

833.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 833.2
FF:10030-101E3 24-65 years, mixed 833.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

583.5
Pig sample Sample description nTPM
Retina
nTPM: 583.6
Samples: 4

Max nTPM: 662.2
Min nTPM: 526.1
Sample A Female 570.1
Sample B Female 575.8
Sample C Male 662.2
Sample D Male 526.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3942.0
Mouse sample Sample description nTPM
Retina
nTPM: 3942.0
Samples: 4

Max nTPM: 4468.8
Min nTPM: 3324.0
Sample A Male 4212.7
Sample B Male 3762.4
Sample C Female 4468.8
Sample D Female 3324.0

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