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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:234.4 nTPM
HPA Brain:113.6 nTPM
GTEx:234.4 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:26.2 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
Sample id Sample description nTPM
Amygdala
nTPM: 104.5
2695 Female, age 67, right hemisphere 121.5
2514 Male, age 75, right hemisphere 106.4
2517 Female, age 94, left hemisphere 106.4
1987 Female, age 91, left hemisphere 97.8
2814 Male, age 76, right hemisphere 90.6
Basal amygdala
nTPM: 101.8
2609 Male, age 75, right hemisphere 132.9
2827 Female, age 67, right hemisphere 106.2
2110 Male, age 80, left hemisphere 96.7
2685 Female, age 94, left hemisphere 96.0
2243 Female, age 91, right hemisphere 93.0
1955 Male, age 76, both hemispheres 85.8
Central amygdala
nTPM: 112.7
2826 Female, age 94, left hemisphere 165.3
2515 Male, age 75, right hemisphere 131.3
2239 Male, age 80, left hemisphere 92.0
2701 Female, age 91, right hemisphere 88.9
1905 Male, age 76, both hemispheres 85.8
Corticomedial amygdala
nTPM: 90.8
2428 Male, age 75, right hemisphere 121.4
2829 Male, age 80, left hemisphere 103.1
2242 Female, age 91, right hemisphere 88.6
2535 Female, age 67, right hemisphere 83.4
2429 Female, age 94, left hemisphere 77.4
2240 Male, age 76, both hemispheres 71.2
Lateral amygdala
nTPM: 113.6
2830 Female, age 67, right hemisphere 144.7
2516 Male, age 75, right hemisphere 129.4
2534 Female, age 94, left hemisphere 124.0
2256 Male, age 80, left hemisphere 104.3
2255 Female, age 91, right hemisphere 94.7
1883 Male, age 76, both hemispheres 84.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 234.4
Samples: 152

Max nTPM: 558.6
Min nTPM: 107.5
Std nTPM: 78.7
Median nTPM: 219.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 558.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 506.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 436.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 414.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 404.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 401.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 396.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 388.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 377.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 377.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 368.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 367.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 358.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 355.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 353.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 347.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 346.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 343.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 334.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 329.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 323.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 323.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 317.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 315.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 312.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 305.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 298.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 295.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 295.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 294.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 293.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 292.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 288.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 284.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 283.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 279.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 274.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 273.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 270.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 270.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 269.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 269.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 269.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 268.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 267.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 263.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 259.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 256.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 253.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 252.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 250.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 246.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 245.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 244.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 243.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 242.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 240.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 239.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 238.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 235.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 234.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 230.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 229.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 229.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 228.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 228.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 227.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 225.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 224.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 223.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 223.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 223.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 222.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 221.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 221.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 221.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 218.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 218.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 215.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 213.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 212.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 210.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 210.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 208.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 207.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 207.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 204.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 203.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 203.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 203.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 202.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 202.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 202.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 201.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 200.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 200.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 197.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 196.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 195.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 194.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 192.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 186.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 183.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 182.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 180.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 180.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 180.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 179.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 177.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 177.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 177.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 175.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 175.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 174.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 173.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 173.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 173.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 172.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 169.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 169.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 168.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 167.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 166.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 163.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 163.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 162.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 162.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 162.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 160.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 159.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 159.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 159.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 159.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 158.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 157.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 155.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 154.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 154.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 153.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 151.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 149.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 147.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 144.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 141.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 140.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 139.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 138.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 134.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 123.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 121.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 107.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 34.0
FF:10151-102I7 76 years, female 34.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.1
Pig sample Sample description nTPM
Amygdala
nTPM: 18.1
Samples: 4

Max nTPM: 23.2
Min nTPM: 15.1
Sample A Female 23.2
Sample B Female 17.7
Sample C Male 16.5
Sample D Male 15.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.2
Samples: 4

Max nTPM: 30.0
Min nTPM: 20.8
Sample A Male 20.8
Sample B Male 26.2
Sample C Female 30.0
Sample D Female 27.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
68080705 Antisense, RP_040929_01_G04, Mouse strain C57BL/6J (56 days, male) 0.1

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