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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:110.1 nTPM
HPA Brain:278.2 nTPM
GTEx:110.1 nTPM
FANTOM5:213.3 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:42.5 nTPM
Allen mouse:5.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.2
Sample id Sample description nTPM
Amygdala
nTPM: 261.8
2814 Male, age 76, right hemisphere 382.1
2695 Female, age 67, right hemisphere 312.7
2514 Male, age 75, right hemisphere 230.2
2517 Female, age 94, left hemisphere 213.0
1987 Female, age 91, left hemisphere 170.8
Basal amygdala
nTPM: 222.2
2827 Female, age 67, right hemisphere 312.4
2685 Female, age 94, left hemisphere 240.1
1955 Male, age 76, both hemispheres 228.9
2110 Male, age 80, left hemisphere 217.8
2609 Male, age 75, right hemisphere 212.5
2243 Female, age 91, right hemisphere 121.7
Central amygdala
nTPM: 246.1
2826 Female, age 94, left hemisphere 343.4
1905 Male, age 76, both hemispheres 304.0
2701 Female, age 91, right hemisphere 210.7
2239 Male, age 80, left hemisphere 191.4
2515 Male, age 75, right hemisphere 181.0
Corticomedial amygdala
nTPM: 162.1
2240 Male, age 76, both hemispheres 209.0
2535 Female, age 67, right hemisphere 191.6
2429 Female, age 94, left hemisphere 190.0
2428 Male, age 75, right hemisphere 183.4
2829 Male, age 80, left hemisphere 127.6
2242 Female, age 91, right hemisphere 71.2
Lateral amygdala
nTPM: 278.2
2830 Female, age 67, right hemisphere 394.6
1883 Male, age 76, both hemispheres 286.9
2516 Male, age 75, right hemisphere 285.3
2534 Female, age 94, left hemisphere 267.1
2256 Male, age 80, left hemisphere 243.5
2255 Female, age 91, right hemisphere 191.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 110.1
Samples: 152

Max nTPM: 336.4
Min nTPM: 15.1
Std nTPM: 60.7
Median nTPM: 96.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 336.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 334.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 329.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 284.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 266.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 261.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 246.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 213.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 212.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 207.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 190.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 189.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 188.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 183.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 181.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 180.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 178.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 176.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 176.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 176.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 174.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 173.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 172.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 169.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 168.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 168.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 166.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 160.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 158.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 153.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 152.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 151.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 147.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 147.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 146.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 146.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 145.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 143.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 140.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 140.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 139.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 137.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 136.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 133.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 127.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 127.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 124.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 124.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 123.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 122.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 121.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 120.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 120.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 118.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 118.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 114.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 114.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 112.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 110.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 108.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 108.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 106.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 106.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 105.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 104.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 101.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 99.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 98.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 97.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 96.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 95.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 94.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 94.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 94.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 92.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 88.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 86.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 84.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 84.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 83.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 82.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 82.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 81.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 80.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 78.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 78.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 76.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 75.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 73.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 72.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 72.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 71.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 71.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 70.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 70.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 69.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 69.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 68.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 68.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 68.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 66.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 66.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 65.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 65.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 64.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 62.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 61.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 61.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 61.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 60.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 58.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 58.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 58.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 57.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 54.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 52.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 50.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 50.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 49.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 48.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 48.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 47.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 47.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 47.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 46.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 45.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 44.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 44.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 44.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 42.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 40.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 36.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 34.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 31.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

213.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 213.3
FF:10151-102I7 76 years, female 213.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.2
Pig sample Sample description nTPM
Amygdala
nTPM: 30.2
Samples: 4

Max nTPM: 44.6
Min nTPM: 22.0
Sample A Female 25.9
Sample B Female 44.6
Sample C Male 28.2
Sample D Male 22.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 42.6
Samples: 4

Max nTPM: 49.0
Min nTPM: 40.0
Sample A Male 40.4
Sample B Male 40.8
Sample C Female 49.0
Sample D Female 40.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.3
75146004 Antisense, RP_060220_02_B10, Mouse strain C57BL/6J (56 days, male) 6.9
564654 Antisense, RP_040826_01_B12, Mouse strain C57BL/6J (56 days, male) 3.8

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